Comparative mitogenomic analysis of species in the subfamily Amphinemurinae (Plecoptera: Nemouridae) reveal conserved mitochondrial genome organization

Cao, Jinjun; Wāng, Ying; Li, Weihai

doi:10.1016/j.ijbiomac.2019.07.087

Cited by 29 publications

(41 citation statements)

References 63 publications

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“…The complete mitochondrial genome of A. bulla is a circular double-stranded with 15,827 bp in length, which encodes 22 transfer RNA genes (tRNAs), 13 protein-coding genes (PCGs), two ribosomal RNA genes (rRNAs), and a control region, were similar with other published stoneflies (Cao et al 2019;Ding et al 2019;Chen et al 2020). The base composition of the mitochondrial genome was biased toward A and T, with 68.9% A þ T content (A ¼ 36.5%, T ¼ 32.5%, C ¼ 18.9%, G ¼ 12.2%).…”

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confidence: 67%

“…To date, there are 205 valid species in the subfamily Amphinemurinae from the Holarctic and Oriental Regions with more than 90 species distributed in China (Yang and Li 2018;DeWalt and Ower 2019;DeWalt et al 2020;Li et al 2020;Mo et al 2020). Three mitochondrial genomes sequenced from the genus Amphinemura are all from Chinese species (Cao et al 2019;Chen et al 2020), here, we sequence a fourth complete mitochondrial genome, Amphinemura bulla Shimizu, 1997 (GenBank accession number MW339348) from Japan using high-throughput sequencing. An adult specimen was collected from Matsuyama City, Ehime Prefecture, Japan (coordinate as follows: N 33.516, E 133.500) on 22 October 2015 by D avid Mur anyi.…”

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confidence: 99%

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The complete mitochondrial genome of Amphinemura bulla Shimizu, 1997 (Plecoptera: Nemouridae) from Japan

Wang

Cao

Murányi

et al. 2021

Mitochondrial DNA Part B

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The genus Amphinemura belongs to the family Nemouridae (Plecoptera) and has 205 species in the Holarctic and Oriental Regions. We sequenced the fourth complete mitochondrial genome of A. bulla Shimizu, 1997. The mitogenome is 15,827 bp long with 37 genes plus a control region with an A þ T content of 68.9%. There are 10 intergenic spacers (75 bp total) and 13 gene overlaps (43 bp total). All protein-coding genes (PCGs) use normal initiation codons, except ND1 and ND5 which begin with TTG and GTG. Two PCGs (COII and ND5) use a single T as a partial termination codon. Phylogenetic analyses showed that Nemoura and Amphinemura were sister group resulting in a paraphyletic Amphinemurinae different from the morphological classification.

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confidence: 67%

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confidence: 99%

The complete mitochondrial genome of Amphinemura bulla Shimizu, 1997 (Plecoptera: Nemouridae) from Japan

Wang

Cao

Murányi

et al. 2021

Mitochondrial DNA Part B

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“…Dramatic variation in gene organization was found in some insect groups. The gene rearrangements and/or intergenic spacer (IGS) regions appear to be regarded as an additional informative character for phylogenetic reconstruction among some groups [8][9][10].…”

Section: Introductionmentioning

confidence: 99%

Comparative Mitogenomic Analysis of Heptageniid Mayflies (Insecta: Ephemeroptera): Conserved Intergenic Spacer and tRNA Gene Duplication

Lei

et al. 2021

Insects

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Large intergenic spacers and tRNA gene duplications have been reported in several insect groups, although little is known about mitogenomes of mayflies. Here, we determined complete mitogenomes of ten heptageniid species and systemically analyzed their mitogenomic features. Both a conserved intergenic spacer (IGS) and trnM duplication were detected in those mitogenomes. The IGS, which was observed in heptageniids, could be further folded into a stable stem–loop structure. The tRNA gene duplication was found in almost all analyzed mitogenomes, and a unique gene block trnI-trnM-trnQ-trnM-ND2 was also discovered. Our analysis demonstrates that the heptageniid gene arrangement pattern can be explained by the tandem duplication-random loss (TDRL) model. Phylogenetic analyses using both Bayesian inference (BI) and maximum likelihood (ML) methods based on the nucleotide and amino acid sequence data recovered the genus Epeorus as monophyletic with strong support. Our results provide a better understanding of mitogenomic evolution in Heptageniidae, as well as novel molecular markers for species identification of mayflies.

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“…Sphaeronemoura elephas Till now, there are 19 valid species in genus Sphaeronemoura Shimizu and Sivec over the world (Sivec and Stark 2010;Qian et al 2019;DeWalt et al 2020;Li et al 2020), 12 species are distributed in China mainland while the rest seven species occur in other countries of Asia (Wu 1973;Li et al 2014Li et al , 2016Qian et al 2019;Li et al 2020). Two mitochondrial genomes of genus Sphaeronemoura have been reported previously and we sequenced and annotated the species of S. elephas which was reported from Jiangxi Province and it also represents the first record for continental China in this study to provide mitochondrial genome data for future studies of the stoneflies (Cao et al 2019;Li et al 2020). The male specimen with the number VHL 0119 is deposited in the Department of Plant Protection, Henan Institute of Science and Technology (HIST) and tissue sample was from Yongxiu County, Jiangxi Province, China (N29 50 0 , E 115 35 0 ) and was collected in April 2016 by Rongfeng Wang and Weihai Li.…”

Section: Mitochondrial Genome; Phylogenetics;mentioning

confidence: 77%

The mitochondrial genome analysis of Sphaeronemoura elephas (Plecoptera: Nemouridae) from Jiangxi Province of southeastern China

Wei

Cao

Kong

et al. 2020

Mitochondrial DNA Part B

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We sequenced and annotated the species of Sphaeronemoura elephas which represents the first record for continental China from Jiangxi Province in this study to provide mitochondrial genome data for future studies. The entire mitochondrial genome of S. elephas harbored 37 typical code genes and one control region with 15,846 bp in length. The A + T account of total nucleotide, PCGs, tRNAs, rRNAs and control region were 67.1, 64.5, 70.5, 71.0, 82.4%, respectively and the A + T content was the highest in control region. The start codon of all PCGs used ATN except ND5 and ND1 started with GTG and TTG. Eleven PCGs used typical terminal codon TAA or TAG while the COII and ND5 stopped with the single T. Based on 13 PCGs by using Bayesian (BI) and maximum-likelihood (ML) methods, we found that the genus Sphaeronemoura and Mesonemoura were sister groups and the species of Amphinemurinae was monophyletic group.

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Comparative mitogenomic analysis of species in the subfamily Amphinemurinae (Plecoptera: Nemouridae) reveal conserved mitochondrial genome organization

Cited by 29 publications

References 63 publications

The complete mitochondrial genome of Amphinemura bulla Shimizu, 1997 (Plecoptera: Nemouridae) from Japan

The complete mitochondrial genome of Amphinemura bulla Shimizu, 1997 (Plecoptera: Nemouridae) from Japan

Comparative Mitogenomic Analysis of Heptageniid Mayflies (Insecta: Ephemeroptera): Conserved Intergenic Spacer and tRNA Gene Duplication

The mitochondrial genome analysis of Sphaeronemoura elephas (Plecoptera: Nemouridae) from Jiangxi Province of southeastern China

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