Comparative genomics reveals genus specific encoding of amino acids by tri-nucleotide SSRs in human pathogenic Streptococcus and Staphylococcus bacteria

Mahfooz, Sahil; Narayan, Jitendra; Ahmed, Ruba Mustafa Elsaid; Elhag, Amel Bakri Mohammed; Mohammed, Nuha Abdel Rahman Khalil; Kausar, Mohd Adnan

doi:10.1007/s11756-022-01143-2

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Biologia

2022

DOI: 10.1007/s11756-022-01143-2

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Comparative genomics reveals genus specific encoding of amino acids by tri-nucleotide SSRs in human pathogenic Streptococcus and Staphylococcus bacteria

Sahil Mahfooz

Jitendra Narayan

Ruba Mustafa Elsaid Ahmed

et al.

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Cited by 4 publications

References 37 publications

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Elucidation of SSR polymorphism in human pathogenic fungi Cryptococcus neoformans with focus on isolate-specific marker generation and genetic diversity assessment

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Comparative genome analysis reveals driving forces behind Monkeypox virus evolution and sheds light on the role of ATC trinucleotide motif

Agarwal,

Shukla,

Bhatia

et al. 2024

Virus Evolution

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Monkeypox (MPOX), a zoonotic disease originating in Western and Central Africa in 1970, has seen a recent surge in outbreaks across 100+ countries. A comparative analysis of 404 Monkeypox virus (MPXV) genomes revealed notable changes in microsatellite abundance and density, especially within Clades I, IIa, and IIb. Each clade exhibited unique microsatellite motifs, with twenty-six conserved loci specific to MPXV, suggesting their potential as molecular markers in diagnostics. Additionally, nine genes in the MPXV genome featured ten variable hotspot microsatellite regions associated with surface protein synthesis and host control. Notably, gene OPG153, especially at the SSR locus ‘(ATC)n’, exhibited the most pronounced variations among lineages over time and plays a role in virus pathogenesis within the host cell. These findings not only enhance our understanding of MPXV unique molecular profile but also offer valuable insights into potential pathogenic and evolutionary implications.

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Comparative genomics reveals genus specific encoding of amino acids by tri-nucleotide SSRs in human pathogenic Streptococcus and Staphylococcus bacteria

Cited by 4 publications

References 37 publications

A scoring system for histological evaluation of skin during Staphylococcus aureus infections

A scoring system for histological evaluation of skin during Staphylococcus aureus infections

Elucidation of SSR polymorphism in human pathogenic fungi Cryptococcus neoformans with focus on isolate-specific marker generation and genetic diversity assessment

Comparative genome analysis reveals driving forces behind Monkeypox virus evolution and sheds light on the role of ATC trinucleotide motif

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