2014
DOI: 10.1128/genomea.01219-14
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Comparative Genome Analysis of Two Isolates of the Fish Pathogen Piscirickettsia salmonis from Different Hosts Reveals Major Differences in Virulence-Associated Secretion Systems

Abstract: Outbreaks caused by Piscirickettsia salmonis are one of the major threats to the sustainability of the Chilean salmon industry. We report here the annotated draft genomes of two P. salmonis isolates recovered from different salmonid species. A comparative analysis showed that the number of virulence-associated secretion systems constitutes a main genomic difference.

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Cited by 35 publications
(36 citation statements)
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“…A previous study using drafted genomes suggested that P. salmonis PM15972A1 lacks one of the T4SS loci detected in the LF-89 strain (Bohle et al, 2014). We confirmed this fact in a T346Hunter analysis using the closed version of the sequence.…”
Section: Resultssupporting
confidence: 84%
“…A previous study using drafted genomes suggested that P. salmonis PM15972A1 lacks one of the T4SS loci detected in the LF-89 strain (Bohle et al, 2014). We confirmed this fact in a T346Hunter analysis using the closed version of the sequence.…”
Section: Resultssupporting
confidence: 84%
“…1). Moreover, we have demonstrated that all characterized P. salmonis strains have flagellar genes and share the same genetic organization (Eppinger et al 2013, Bohle et al 2014, Yañez et al 2014, Pulgar et al 2015. Our results suggest that P. salmonis has the potential to develop a flagellum controlled by this transcriptional cascade.…”
Section: Discussionmentioning
confidence: 58%
“…Once the genes were confirmed, the CLC Main Workbench 5 software (www.clcbio.com) was used to complement sequence analysis, specifically for accurate alignments, and to determine the putative operon organization of flagellar genes in P. salmonis. Finally, flagellar gene organization was compared between different P. salmonis strains using recently reported genomes (Eppinger et al 2013, Bohle et al 2014, Yañez et al 2014, Pulgar et al 2015.…”
Section: Screening Of the Piscirickettsia Salmonis Genomementioning
confidence: 99%
“…An understanding of the pathogenesis of SRS and of the biological mechanisms of the in vivo interaction of P. salmonis with its host would allow the development of alternatives for treatment, prevention and disease control. Although the sequences of the 16S rRNA gene and ITS 16S‐23S of several P. salmonis isolates show high similarity, strain EM‐90 isolated from Atlantic salmon farmed in Chile locates separately from LF‐89 isolates (Mauel et al., ), and it shows a different genetic pattern and a different number of secretion systems compared to strain LF‐89 (Bohle et al., ; Casanova et al., ). Despite the similarity between P. salmonis LF‐89 strains, differences in the virulence patterns of different isolates in i.p.…”
Section: Discussionmentioning
confidence: 99%
“…Isolate PS‐EM‐90 used in this study was obtained from a field outbreak described by Bohle et al. (), who reported that the main genomic differences between LF‐89 and EM‐90 are the number of secretion systems associated with virulence. This would explain the higher specificity of PS‐EM‐90 for Atlantic salmon.…”
Section: Discussionmentioning
confidence: 99%