Seasonal variation in nutrient loading in Lake Baringo were examined by investigating 10 limnological variables which are; Temperature, pH, electrical conductivity (EC), total dissolved solids (TDS), salinity, total nitrogen (TN), nitrates (NO 3 ), nitrites (NO 2 ), Ammonia (NH 3 ), total phosphates (TP) and orthophosphates (OP). Sampling was carried out in January (dry season), April (beginning of rainy season), August (mid rainy season) and October (end of rainy season) from 10 different stations and analyzed using both chemical and statistical methods. All parameters varied seasonally except salinity which was statistically significant. Temperature mean values ranged from (27.8±4.94) to (31.01±1.97), pH (7.91±0.44) to (8.44±0.59), EC (332±83.78) to (540±1.69), TDS (243.88±1.73) to (302.63±2.00), Salinity (0.08±0.05) to (0.2±2.97), TN (2.52±1.79) to (3.52±1.75), NO 3 (1.21±1.22) to (2.37±1.10), NH 3 (0.14±0.06) to (0.41±0.21), TP (0.74±0.33) to (0.85±0.90), OP (0.20±0.08) to (0.41±0.59) while Nitrites was below the detectable limits <0.005. This result suggests that seasonal variations had significant negative effects on water quality of the basin which is adversely impaired by discharges from agricultural, industrial and domestic sources. These findings will assist and guide management decisions.