Phthalate have been detected in human urine and may cause endocrine disruption. However, research on the prediction of exposure and the association with thyroid hormones during gestation is limited. We recruited 463 pregnant women and collected urine and blood samples, and questionnaire data at initial maternity examination. We analyzed ten phthalate metabolites: mono-isobutyl phthalate (MiBP), mono-methyl phthalate (MMP), mono-ethyl phthalate (MEP), mono-n-butyl phthalate (MnBP), mono-n-octyl phthalate (MOP), mono-benzyl phthalate (MBzP), as well as metabolite of di-2-ethylhexyl phthalate (DEHP): mono (2-ethylhexyl) phthalate, mono-(2-ethyl-5-oxohexyl) phthalate, and mono-(2-ethyl-5-carboxypentyl) phthalate. Multivariable generalized estimating equation models and liner mixed models were used to predict urinary biomarker concentrations and assessed associations between phthalate exposure and thyroid hormones. We observed negative associations between phthalate metabolites and old age (MMP, MnBP), and physical activity (MiBP, MOP). Positive associations with lower education (MEP, MOP), living near the road (MEP, MnBP, ∑DEHP), living space (MiBP, MnBP, ∑DEHP), consuming more puffed food (MEP, MBzP), and take-out food (MEP, MnBP,∑DEHP). MnBP (percent change [%△] = 4.25; 95% CI = 0.32, 8.18) and ∑DEHP (%△=5.12; 95% CI = 1.25, 8.99) were positively associated with thyroid stimulating hormone, and this suggested MEP and MnBP were inversely associated with free thyroxine (%△=-1.26; 95% CI=-2.34, -0.18) and total triiodothyronin (%△=-2.62; 95% CI=-3.17, -2.07). Our findings suggest that lower consumption of puffed food, cosmetics use and moderate physical activity were predictive of lower phthalate biomarker concentration. Certain phthalate esters are associated with altered thyroid hormone levels.