Comparative analyses of five complete chloroplast genomes from the endemic genus Cremanthodium (Asteraceae) in Himalayan and adjacent areas

Zhong, Weihong; Du, Xiaolang; Wang, Xiaoyun; Cao, Lingfeng; Mu, Zejing; Zhong, Guoyue

doi:10.1007/s12298-023-01292-x

Cited by 2 publications

(3 citation statements)

References 24 publications

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“… 2021 ), C. rhodocephalum OM386859 (Zhong et al. 2023 ), C. nervosum OM386858 (Zhong et al. 2023 ), C. brunneopilosum OM386856 (Zhong et al.…”

Section: Resultsmentioning

confidence: 99%

“… 2023 ), C. ellisii OM386857 (Zhong et al. 2023 ), C. arnicoides OM386855 (Zhong et al. 2023 ), J. vulgaris HQ234669 (Doorduin et al.…”

Section: Resultsmentioning

confidence: 99%

“… 2023 ), C. arnicoides OM386855 (Zhong et al. 2023 ), J. vulgaris HQ234669 (Doorduin et al. 2011 ), J. maritima OL960706 (Zhang and Gong 2023 ), J. vulgaris NC_015543 (Doorduin et al.…”

Section: Resultsmentioning

confidence: 99%

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The complete chloroplast genome sequence of Jacobaea cannabifolia

Su,

Cao,

et al. 2024

Mitochondrial DNA Part B

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Jacobaea cannabifolia is a widely used medicinal plant. The total length of the chloroplast genome was 151,390 bp, and it comprised a large single-copy (LSC, 83,432 bp) region, a small single-copy (SSC, 18,304 bp) region, and a pair of inverted repeats (IRs, 49,654 bp). A total of 130 coding genes were annotated, including 88 protein-coding genes, 8 rRNA genes, and 34 tRNA genes. A phylogenetic tree was showed that J. cannabifolia and other species of the same genus clustered together.

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“… 2021 ), C. rhodocephalum OM386859 (Zhong et al. 2023 ), C. nervosum OM386858 (Zhong et al. 2023 ), C. brunneopilosum OM386856 (Zhong et al.…”

Section: Resultsmentioning

confidence: 99%

“… 2023 ), C. ellisii OM386857 (Zhong et al. 2023 ), C. arnicoides OM386855 (Zhong et al. 2023 ), J. vulgaris HQ234669 (Doorduin et al.…”

Section: Resultsmentioning

confidence: 99%

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The complete chloroplast genome sequence of Jacobaea cannabifolia

Su,

Cao,

et al. 2024

Mitochondrial DNA Part B

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Comparative analysis of complete chloroplast genomes of Synotis species (Asteraceae, Senecioneae) for identification and phylogenetic analysis

Liu,

Luo,

Chen

et al. 2024

BMC Genomics

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Background The Synotis (C. B. Clarke) C. Jeffrey & Y. L. Chen is an ecologically important genus of the tribe Senecioneae, family Asteraceae. Because most species of the genus bear similar morphology, traditional morphological identification methods are very difficult to discriminate them. Therefore, it is essential to develop a reliable and effective identification method for Synotis species. In this study, the complete chloroplast (cp.) genomes of four Synotis species, S. cavaleriei (H.Lév.) C. Jeffrey & Y.L. Chen, S. duclouxii (Dunn) C. Jeffrey & Y.L. Chen, S. nagensium (C.B. Clarke) C. Jeffrey & Y.L. Chen and S. erythropappa (Bureau & Franch.) C. Jeffrey & Y. L. Chen had been sequenced using next-generation sequencing technology and reported here. Results These four cp. genomes exhibited a typical quadripartite structure and contained the large single-copy regions (LSC, 83,288 to 83,399 bp), the small single-copy regions (SSC, 18,262 to 18,287 bp), and the inverted repeat regions (IR, 24,837 to 24,842 bp). Each of the four cp. genomes encoded 134 genes, including 87 protein-coding genes, 37 tRNA genes, 8 rRNA genes, and 2 pseudogenes ( ycf1 and rps19 ). The highly variable regions ( trnC-GCA-petN , ccsA-psaC , trnE-UUC-rpoB , ycf1 , ccsA and petN ) may be used as potential molecular barcodes. The complete cp. genomes sequence of Synotis could be used as the potentially effective super-barcode to accurately identify Synotis species. Phylogenetic analysis demonstrated that the four Synotis species were clustered into a monophyletic group, and they were closed to the Senecio , Crassocephalum and Dendrosenecio in tribe Senecioneae. Conclusions This study will be useful for further species identification, evolution, genetic diversity and phylogenetic studies within this genus Synotis and the tribe Senecioneae. Supplementary Information The online version contains supplementary material available at 10.1186/s12864-024-10663-x.

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Comparative analyses of five complete chloroplast genomes from the endemic genus Cremanthodium (Asteraceae) in Himalayan and adjacent areas

Cited by 2 publications

References 24 publications

The complete chloroplast genome sequence of Jacobaea cannabifolia

The complete chloroplast genome sequence of Jacobaea cannabifolia

Comparative analysis of complete chloroplast genomes of Synotis species (Asteraceae, Senecioneae) for identification and phylogenetic analysis

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