Abstract:Purpose: Intensity-modulated radiation therapy ͑IMRT͒ is the state of the art technique for head and neck cancer treatment. It requires precise delineation of the target to be treated and structures to be spared, which is currently done manually. The process is a time-consuming task of which the delineation of lymph node regions is often the longest step. Atlas-based delineation has been proposed as an alternative, but, in the authors' experience, this approach is not accurate enough for routine clinical use. … Show more
“…This may potentially lead to violations of the cranio-caudal limits on the one hand [17] and to non compensation of large volumes overestimations on the other hand [18]. “Active Contour” (AC) or “Active Shape Modelling” post-processing after averaged atlas deformation constrains volumes within their anatomic boundaries, potentially compensating for these problems (AVG-AC) [12,13,21]. Our method takes the advantages of the AC methodology applied to the fast and simple IND atlas.…”
Section: Discussionmentioning
confidence: 99%
“…Different deformation registration strategies were developed, based on either individual patient data, averaged patient generation, multiple patient data [11] or, more recently, introduction of a volume post-processing by recognition of the key anatomical structures of the head and neck area [12,13]. …”
BackgroundIntensity modulated radiotherapy for head and neck cancer necessitates accurate definition of organs at risk (OAR) and clinical target volumes (CTV). This crucial step is time consuming and prone to inter- and intra-observer variations. Automatic segmentation by atlas deformable registration may help to reduce time and variations. We aim to test a new commercial atlas algorithm for automatic segmentation of OAR and CTV in both ideal and clinical conditions.MethodsThe updated Brainlab automatic head and neck atlas segmentation was tested on 20 patients: 10 cN0-stages (ideal population) and 10 unselected N-stages (clinical population). Following manual delineation of OAR and CTV, automatic segmentation of the same set of structures was performed and afterwards manually corrected. Dice Similarity Coefficient (DSC), Average Surface Distance (ASD) and Maximal Surface Distance (MSD) were calculated for “manual to automatic” and “manual to corrected” volumes comparisons.ResultsIn both groups, automatic segmentation saved about 40% of the corresponding manual segmentation time. This effect was more pronounced for OAR than for CTV. The edition of the automatically obtained contours significantly improved DSC, ASD and MSD. Large distortions of normal anatomy or lack of iodine contrast were the limiting factors.ConclusionsThe updated Brainlab atlas-based automatic segmentation tool for head and neck Cancer patients is timesaving but still necessitates review and corrections by an expert.
“…This may potentially lead to violations of the cranio-caudal limits on the one hand [17] and to non compensation of large volumes overestimations on the other hand [18]. “Active Contour” (AC) or “Active Shape Modelling” post-processing after averaged atlas deformation constrains volumes within their anatomic boundaries, potentially compensating for these problems (AVG-AC) [12,13,21]. Our method takes the advantages of the AC methodology applied to the fast and simple IND atlas.…”
Section: Discussionmentioning
confidence: 99%
“…Different deformation registration strategies were developed, based on either individual patient data, averaged patient generation, multiple patient data [11] or, more recently, introduction of a volume post-processing by recognition of the key anatomical structures of the head and neck area [12,13]. …”
BackgroundIntensity modulated radiotherapy for head and neck cancer necessitates accurate definition of organs at risk (OAR) and clinical target volumes (CTV). This crucial step is time consuming and prone to inter- and intra-observer variations. Automatic segmentation by atlas deformable registration may help to reduce time and variations. We aim to test a new commercial atlas algorithm for automatic segmentation of OAR and CTV in both ideal and clinical conditions.MethodsThe updated Brainlab automatic head and neck atlas segmentation was tested on 20 patients: 10 cN0-stages (ideal population) and 10 unselected N-stages (clinical population). Following manual delineation of OAR and CTV, automatic segmentation of the same set of structures was performed and afterwards manually corrected. Dice Similarity Coefficient (DSC), Average Surface Distance (ASD) and Maximal Surface Distance (MSD) were calculated for “manual to automatic” and “manual to corrected” volumes comparisons.ResultsIn both groups, automatic segmentation saved about 40% of the corresponding manual segmentation time. This effect was more pronounced for OAR than for CTV. The edition of the automatically obtained contours significantly improved DSC, ASD and MSD. Large distortions of normal anatomy or lack of iodine contrast were the limiting factors.ConclusionsThe updated Brainlab atlas-based automatic segmentation tool for head and neck Cancer patients is timesaving but still necessitates review and corrections by an expert.
“…To overcome this problem, various approaches based on optimal atlas selection, and multiatlas segmentation and fusion have been proposed. [9][10][11][12][13] Hybrid approaches combine registration and segmentation into a common framework, [14][15][16] where, for example, evolution of deformable models can serve as a registration constraint or used to compensate for the residual differences after the registration step.…”
Our automated segmentation framework is able to segment anatomy in the head and neck region with high accuracy within a clinically-acceptable segmentation time.
“…As proposed in [9], when applying the ASM on new images, following the same procedure shown in Figure 4, they are globally aligned through rigid registrations with the template image, and then locally aligned through both rigid and For each new shape, we perform a least square fitting by the ASM as a linear combination of the mean shape and the modes of normal shape variations. The fitted shape x v is represented as…”
Section: Methodsmentioning
confidence: 99%
“…We followed the approach introduced in [9] for constructing the active shape model. We selected 15 micro-CT images classified as normal by the DART evaluators as the training set for the ASM.…”
High-throughput micro-CT imaging has been used in our laboratory to evaluate fetal skeletal morphology in developmental toxicology studies. Currently, the volume-rendered skeletal images are visually inspected and observed abnormalities are reported for compounds in development. To improve the efficiency and reduce human error of the evaluation, we implemented a framework to automate the evaluation process. The framework starts by dividing the skull into regions of interest and then measuring various geometrical characteristics. Normal/abnormal classification on the bone segments is performed based on identifying statistical outliers. In pilot experiments using rabbit fetal skulls, the majority of the skeletal abnormalities can be detected successfully in this manner. However, there are shape-based abnormalities that are relatively subtle and thereby difficult to identify using the geometrical features. To address this problem, we introduced a model-based approach and applied this strategy on the squamosal bone. We will provide details on this active shape model (ASM) strategy for the identification of squamosal abnormalities and show that this method improved the sensitivity of detecting squamosal-related abnormalities from 0.48 to 0.92.
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