“…Mostly during the past five years, several software applications have been developed to analyze and visualize genomic interaction data, with different characteristics and outputs. If we consider Hi-C, available analysis software applications are chromoR [6], HiCdat [7], HiCNorm [8], Hi-Corrector [9], Hi-C Pipeline [10], HiC-Pro [11], HiCUP [12], HiFive [13], HIPPIE [14], HiTC [15], HOMER [16], ICE [17]. However, besides correcting biases and generating contact maps, most of them do not provide the entire pipeline to pre-process the raw data (downloadable files) or to compute topological domain coordinates.…”