The impact of in-plane and perpendicular magnetic fields on the spatial arrangement of superparamagnetic nanospheres is explored. We utilize nanosphere self-organization methods like Spin Coating and Drop-Casting in the presence of magnetic fields. In this way, the additional parameter of the long range magnetic dipolar interactions is introduced to the competing nanosphere–surface and nanosphere–nanosphere interactions, which control order and agglomeration. We present a comparative analysis of the self-assembly characteristics with respect to the different methods and the effect of the applied field in different directions. Under zero field perfect hexagonal arrays can be obtained by spin coating. Parallel applied fields tend to create directional patterns, while perpendicular favor 3D-accumulation.