Collagen type V/XI is a minor but essential component of collagen fibrils in vertebrates. We here report on age-and tissuerelated variations in isoform usage in cartilages. With maturation of articular cartilage, the ␣1(V) chain progressively replaced the ␣2(XI) chain. A mix of the molecular isoforms, ␣1(XI)␣1(V)␣3(XI) and ␣1(XI)␣2(XI)␣3(XI), best explained this finding. A prominence of ␣1(V) chains is therefore characteristic and a potential biomarker of mature mammalian articular cartilage. Analysis of cross-linked peptides showed that the ␣1(V) chains were primarily cross-linked to ␣1(XI) chains in the tissue and hence an integral component of the V/XI polymer. From nucleus pulposus of the intervertebral disc (in which the bulk collagen monomer is type II as in articular cartilage), type V/XI collagen consisted of a mix of five genetically distinct chains, ␣1(XI), ␣2(XI), ␣3(XI), ␣1(V), and ␣2(V). These presumably were derived from several different molecular isoforms, including ␣1(XI)␣2(XI)␣3(XI), (␣1(XI)) 2 ␣2(V), and others. Meniscal fibrocartilage shows yet another V/XI phenotype. The findings support and extend the concept that the clade B subfamily of COL5 and COL11 gene products should be considered members of the same collagen subfamily, from which, in combination with clade A gene products (COL2A1 or COL5A2), a range of molecular isoforms has evolved into tissue-dependent usage. We propose an evolving role for collagen V/XI isoforms as an adaptable polymeric template of fibril macro-architecture.The collagen framework of hyaline cartilages is based on a covalently cross-linked heteropolymeric network of types II, IX, and XI collagens. During development, collagen type IX molecules are covalently linked to the surface of thin, new fibrils of type II collagen polymerized on a template of type XI collagen (1-5). In fetal cartilage, type XI collagen is a heterotrimer of three genetically distinct chains, ␣1(XI), ␣2(XI), and ␣3(XI) in a 1:1:1 ratio (6 -9). The ␣3(XI) chain has the same primary sequence as ␣1(II), but the chains differ in their posttranslational processing and cross-linking properties (7-9). All three collagen subunits, II, IX, and XI, are heavily cross-linked in the same fibril through a lysyl oxidase-mediated mechanism (2, 5, 9). The location of the cross-links determined by sequence analysis of peptides prepared from proteolytically degraded fibrils reveals a high degree of chain specificity (9). Collagen XI molecules are linked to each other in a head-to-tail fashion by N-telopeptide 2 to helix cross-links and laterally to type II collagen molecules through ␣1(II) C-telopeptides (9). Isolated from mature articular cartilage, type XI collagen includes a significant pool of ␣1(V) chains (6), implying the presence of V/XI hybrid molecules. The ratio of type XI collagen to type II collagen is about 1 to 10 in fetal bovine and human epiphyseal cartilage when compared with 1 to 30 in adult articular cartilage. Similarly, the ratio of collagen IX to collagen II falls from about 1 to 10 to 1 t...