COI (cytochrome oxidase-I) sequence based studies of Carangid fishes from Kakinada coast, India

Persis, M.; Reddy, A. Chandra Sekhar; Rao, L M; Khedkar, G.D.; Ravinder, K; Nasruddin, K.

doi:10.1007/s11033-008-9375-4

Cited by 39 publications

(20 citation statements)

References 16 publications

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“…Ward et al (2005) reported that phylogenetic COX1 sequences could effectively cluster most congeneric and confamilial species. This was observed in previous studies for example in Australian fishes (Ward et al 2005), Canadian freshwater fishes (Hubert et al 2008), Indian carangid fishes (Persis et al 2009), freshwater fishes from Mexico and Guatemala (Valdez-Moreno et al 2009), and Cuban freshwater fishes (Lara et al 2009).…”

Section: Discussionsupporting

confidence: 79%

DNA Barcoding of Freshwater Fishes from Lake Laut Tawar, Aceh Province, Indonesia

Muchlisin¹,

Thomy²,

Fadli³

et al. 2013

Acta Icth et Piscat

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Section: Discussionsupporting

confidence: 79%

DNA Barcoding of Freshwater Fishes from Lake Laut Tawar, Aceh Province, Indonesia

Muchlisin¹,

Thomy²,

Fadli³

et al. 2013

Acta Icth et Piscat

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“…Similarly, Lakra et al (2011) reported very low intra-specific genetic divergence for scombroid fishes and Ward et al (2005) showed in many marine teleost species. Peris et al (2009) also reported very low interspecies genetic distance for Indian the levels of intraspecific homogeneity and interspecific heterogenenity displayed by the intended method (Hallden et al, 1994;Lievens et al, 2001). Mitochondrial CO1 gene, as an attractive "species barcode", its high efficiency in species identification has been reported in Australia marine fishes (Ward et al, 2005), Canadian freshwater fishes (Hubert et al, 2008), ornamental fishes in the market of North America (Steinke et al, 2009b) and marine fishes of Japan (Zhang and Hanner, 2011).…”

Section: Gene Amplification and Sequencingmentioning

confidence: 99%

Comparative Phylogenetic Study of Four Genes of Mitochondrial Genome in Tenpounder Fishes (Order: Elopiformes)

Ramanadevi

Thangaraj

2013

Not Sci Biol

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The Elopiformes represent a group of seven known species of fishes found in marine and estuarine ecosystem and many of them are endemic to East Asia. To date published morphological and molecular phylogenetic hypothesis of Tenpounder fishes are part congruent and there are some areas of significant disagreement with respect to species relationships. The present study analyzed the sequence data from four genes (Cytb, CO1, 16S and 12S rRNA) of mitochondrial genome for the attempt to estimate the relationships among five species such as Elops saurus, E. affinis, E. smithi, E. machnata and E. hawaiensis and to assess the phylogenetic utility of these markers. The Kimura 2-parameter (K2P) genetic distance, average nucleotide frequencies, nucleotide substitution patterns and phylogenetic trees were reconstructed using neighbour joining (NJ) method. The interspecies K2P genetic distance was 0.0158 and intraspecies distance was 0.0042 based on the barcoding gene, CO1 sequence data. Whereas the interspecies K2P genetic distance was 0.6140 and intraspecies genetic distance was 0.0020 based on the Cytb data. The four mitochondrial marker genes used in this study showed different type of cluster and we could not confirm the relationship between the five Elops species. This is due to the independent mutation rate of each mtDNA genes. However, this problem can be overcome by analysing in parallel other gene markers.

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“…In such cases, DNA barcoding-a global bio-identification system for animals using mitochondrial gene cytochrome c oxidase I (COI), can play a key role in identifying up to the species level accurately (Hebert et al, 2003). DNA barcoding is helpful in identifying individuals at different life stages, incomplete specimens, and cryptic species (Basheer et al, 2014;Chakraborty & Ghosh, 2014;Hebert et al, 2004;Lakra et al, 2009;Noikotr et al, 2013;Persis et al, 2009;Ward et al, 2005) and can prove very useful in identifying mislabeled fish products and for identifying the illegal catch of protected species (Civera, 2003;Filonzi et al, 2010). DNA barcoding is a sequencing-based technique which can be utilized for the identification for a wide range of species and it represents the largest attempt to catalog biodiversity using molecular approaches.…”

Section: Introductionmentioning

confidence: 99%

Mitochondrial signatures for identification of grouper species from Indian waters

Basheer

Vineesh

Bineesh

et al. 2016

Mitochondrial DNA Part A

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Groupers are important commercial fish in many parts of the world. Accurate identification is critical for effective conservation assessment and fisheries management. Genetic barcodes provide a simple and reproducible method for the identification of species even in the absence of taxonomic expertise. The generation of reference barcodes from properly identified specimens is an important first step in this direction. Here, 36 species belonging to the subfamily Epinephelinae (Family: Serranidae) were collected from landings on the west coast of India and Port Blair, Andaman, and partial nucleotide sequence data of the mitochondrial cytochrome C oxidase subunit I (COI) gene was generated. Barcodes for 13 species were developed from Indian waters for the first time. Analysis using the COI gene produced phylogenetic trees in concurrence with other multi-gene studies. Epinephelus fasciatus and E. areolatus were found to be a species complex, as hypothesized in other studies. The DNA barcodes developed in the study can be used for identifying species within Epinehelinae, where taxonomic ambiguity still exists. ARTICLE HISTORY

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COI (cytochrome oxidase-I) sequence based studies of Carangid fishes from Kakinada coast, India

Cited by 39 publications

References 16 publications

DNA Barcoding of Freshwater Fishes from Lake Laut Tawar, Aceh Province, Indonesia

DNA Barcoding of Freshwater Fishes from Lake Laut Tawar, Aceh Province, Indonesia

Comparative Phylogenetic Study of Four Genes of Mitochondrial Genome in Tenpounder Fishes (Order: Elopiformes)

Mitochondrial signatures for identification of grouper species from Indian waters

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