AIDS Clinical Trials Group protocol 388 was designed to compare a three-drug regimen (indinavir with dual nucleosides) to a four-drug regimen (indinavir plus nelfinavir or indinavir plus efavirenz with dual nucleosides). Blood samples from patients taking indinavir and nelfinavir were collected over 8 to 12 h following a specified dose and were analyzed with high-performance liquid chromatography. Pharmacokinetic data were derived by using noncompartmental analysis. Following administration of indinavir every 8 h in the absence of nelfinavir (n ؍ 8), the median predose indinavir concentration (C 0 ) was 369 ng/ml (range, <10 to 949 ng/ml; one subject had a concentration of <10 ng/ml), and the concentration 8 h after administration of the study dose was 159 ng/ml (range, 85 to 506 ng/ml). In the group receiving 1,000 mg of indinavir every 12 h with nelfinavir (n ؍ 10), the median indinavir C 0 was <10 ng/ml (range, <10 to 3,740 ng/ml; six subjects had a value of <10 ng/ml), and the C 12 h was 44 ng/ml (range, <10 to 4,236 ng/ml; five subjects had a value of <10 ng/ml), while the subjects who received 1,200 mg of indinavir every 12 h with nelfinavir (n ؍ 7) had a C 0 of 146 ng/ml (range, 58 to 5,215 ng/ml) and a C 12 h of 95 ng/ml (range, 12 to 954 ng/ml). Indinavir clearance was significantly lower in the presence of nelfinavir (median [interquartile range], 34.1 liters/h [range, 22.6 to 45.8 liters/h] versus 47.9 liters/h [range, 42.7 to 70.3 liters/h]; P < 0.017). For subjects receiving 1,000 mg of indinavir every 12 h, the median C 0 value for nelfinavir (n ؍ 9) was 1,779 ng/ml (range, <187.5 to 4,579 ng/ml), and the C 12 h was 1,554 ng/ml (range, <187.5 to 5,540 ng/ml). Due to the unacceptable number of undetectable indinavir trough concentrations, 1,200 mg of indinavir appears to be the preferred dose in a twice-daily regimen that includes nelfinavir.Following the introduction of protease inhibitors and nonnucleoside reverse transcriptase inhibitors, various strategies were evaluated to determine optimal combinations to achieve viral suppression for human immunodeficiency virus (HIV)-infected patients. In addition, the strategy of combining protease inhibitors based on anticipated positive pharmacokinetic interactions was an area of active clinical investigation. To further study these clinical questions in antiretroviral-naive subjects, AIDS Clinical Trials Group protocol (ACTG) 388 was designed to compare a three-drug regimen (indinavir with dual nucleosides) to a four-drug regimen (either indinavir plus nelfinavir or indinavir plus efavirenz with dual nucleosides) (6). At the time that ACTG 388 was implemented, limited data were available describing the drug-drug interaction between indinavir and nelfinavir. For this protease inhibitor combination, early pharmacokinetic information suggested that the combination of the two protease inhibitors would lead to a favorable pharmacokinetic profile for each drug, allowing for every-twelfth-hour dosing, and one report has demonstrated antiviral activity o...