A new ferredoxin has been purified from the photosynthetic bacterium Rhodobacter capsulatus. It is the sixth ferredoxin to be isolated from this bacterium and it was called FdVI.Its primary structure was established based on amino acid sequence analysis of the protein and of peptides derived from it. It is composed of 106 residues including five cysteines. The calculated mass of the polypeptide is 11402.6 Da which matches the experimental value determined by electrospray mass spectrometry. Amino acid sequence comparison revealed that ferredoxin VI (FdVI) is strikingly similar to a ferredoxin from Caulobacter crescentus and to the putidaredoxin from Pseudomonas putida.FdVI exhibited an ultraviolet-visible absorption spectrum typical for a [2Fe-2S] ferredoxin. EPR spectroscopy of the reduced protein showed a nearly axial signal similar to that of mitochondria1 and €? putida ferredoxins.FdVI is biosynthesized in cells growing anaerobically under either nitrogen-sufficient or nitrogen-deficient conditions. Although the function of FdVI is unknown, its structural resemblance to [2Fe-2S] ferredoxins known to transfer electrons to oxygenases such as P-450 cytochromes, suggests that FdVI may have a similar role in R. capsulatus.The photosynthetic bacterium Rhodobacter capsulatus is a facultative phototroph endowed with remarkable abilities of metabolic adaptation. It can grow autotrophically or heterotrophically either in the light or in darkness and can choose between five different growth modes (Madigan and Gest, 1979). It is also capable of fixing molecular nitrogen through a metabolic process which has been extensively studied by biochemical (Hallenbeck et al., 1982a; and genetic approaches (Willison et al., 1985;Klipp et al., 1988). Nitrogen fixation is catalyzed by nitrogenase and requires ATP and a low-potential reductant. Two types of electron-carrier proteins, ferredoxins (Fd) and flavodoxins, are known to serve as electron donors to nitrogenase. In R. capsulatus, the identification of the actual physiological reductant of nitrogenase is complicated by the occurence in this bacterium of an exceptional diversity of electron carriers. Five distinct ferredoxins have been isolated and biochemically characterized; three of them, FdI, FdII and FdIII, appear as representative molecular forms of the dicluster ferredoxins found in a wide range of bacteria (Bruschi and Guerlesquin, 1988). FdI and the homodimeric FdIII, both contain two [4Fe-4S] clusters/monomer (Hallenbeck et al.,