The family of eukaryotic initiation factor 2␣ (eIF2␣) protein kinases plays an important role in regulating cellular protein synthesis under stress conditions. The mammalian kinases PKR and HRI and the yeast kinase GCN2 specifically phosphorylate Ser-51 on the ␣ subunit of the translation initiation factor eIF2. By using an in vivo assay in yeast, the substrate specificity of these three eIF2␣ kinases was examined by substituting Ser-51 in eIF2␣ with Thr or Tyr. In yeast, phosphorylation of eIF2 inhibits general translation but derepresses translation of the GCN4 mRNA. All three kinases phosphorylated Thr in place of Ser-51 and were able to regulate general and GCN4-specific translation. In addition, both PKR and HRI were found to phosphorylate eIF2␣-S51Y and stimulate GCN4 expression. Isoelectric focusing analysis of eIF2␣ followed by detection using anti-eIF2␣ and anti-phosphotyrosine-specific antibodies demonstrated that PKR and HRI phosphorylated eIF2␣-S51Y on Tyr in vivo. These results provide new insights into the substrate recognition properties of the eIF2␣ kinases, and they are intriguing considering the potential for alternate substrates for PKR in cellular signaling and growth control pathways.The human interferon-induced double-stranded RNA-activated protein kinase PKR, which functions in the cellular antiviral defense mechanism, is a member of a family of structurally related Ser/Thr kinases that specifically phosphorylate Ser-51 on the ␣ subunit of the translation initiation factor eIF2 1 (1, 2). The binding of double-stranded RNA, thought to be generated during viral infections, is proposed to alter the conformation of PKR and activate the kinase to autophosphorylate (1, 2). The active, phosphorylated form of PKR can then phosphorylate eIF2␣ on Ser-51 and convert eIF2 into an inhibitor of its guanine nucleotide exchange factor eIF2B, resulting in the inhibition of translation initiation (1, 2). The other members of the eIF2␣ kinase family are the mammalian heme-regulated inhibitor of translation (HRI) that is activated by heme deprivation, the apparently ubiquitous kinase GCN2, first identified in yeast but also found in flies and mammals, which is activated under conditions of amino acid or purine nucleotide deprivation (1-4), and the newly identified mammalian kinase PERK or PEK, a transmembrane kinase located in the endoplasmic reticulum that is activated under conditions of endoplasmic reticulum stress (5, 6). In the yeast Saccharomyces cerevisiae, low level phosphorylation of eIF2␣ by GCN2 alters the pattern of translation reinitiation on the GCN4 mRNA and induces GCN4 expression (2). Increased synthesis of GCN4, a transcriptional activator of amino acid biosynthetic genes, enables cells to withstand amino acid starvation conditions. The mammalian eIF2␣ kinases PKR and HRI can substitute for GCN2 in yeast to phosphorylate eIF2␣ and stimulate GCN4 translation (7). In addition, high level phosphorylation of eIF2␣ in yeast by mutationally hyperactivated alleles of GCN2 or by overexpression of PK...