The understanding,
control, and removal of nonoligonucleotide process-related
impurities (PRI) are of key importance for the manufacturing of therapeutic
oligonucleotides as their presence in the final product is both a
quality and safety concern. Regulatory agencies require manufacturers
to demonstrate that PRI are under control or adequately purged during
the manufacturing process. Purging depends on the physicochemical
properties of the impurities and the unit operations of the manufacturing
process but should be independent of oligonucleotide size or type.
The purging power of unit operations relevant to oligonucleotide manufacturing
(synthesis, cleavage and deprotection, chromatography, ultrafiltration/diafiltration)
was measured using representative solvents and other small molecules
typical for oligonucleotide synthesis. The results show that each
unit operation has significant purging capability (synthesis >1000;
cleavage and deprotection >100 (reactivity, when applicable); chromatography
>1000; ultrafiltration/diafiltration >10) and that large overall
purge
factors can be obtained (≥1 × 107). Experimentally
determined purge values are aligned with theoretical purge values;
thus, the use of purge arguments in oligonucleotide control strategies
is a sound scientific approach. Guidance on reasonable purge values
for oligonucleotide unit operations is presented. Additionally, the
data demonstrate that solvents and reagents typically used in oligonucleotide
synthesis are robustly cleared by the process and should not require
testing in the final product.