Peptidylarginine deiminases (PADs) are enzymes that catalyze
the
Ca
2+
-dependent conversion of arginine residues into proteins
to citrulline residues. Five PAD isozymes have been identified in
mammals. Several studies have shown that the active-site pockets of
these isozymes are formed when Ca
2+
ions are properly bound.
We previously characterized the structures of PAD3 in six states.
Among these, we identified a “nonproductive” form of
PAD3 in which the active site was disordered even though five Ca
2+
ions were bound. This strange structure was probably obtained
as a result of either high Ca
2+
concentration (∼260
mM)-induced denaturation during the crystallization process or high
Ca
2+
-concentration-induced autocitrullination. While autocitrullination
has been reported in PAD2 and PAD4 for some time, only a single report
on PAD3 has been published recently. In this study, we investigated
whether PAD3 catalyzes the autocitrullination reaction and identified
autocitrullination sites. In addition to the capacity of PAD3 for
autocitrullination, the autocitrullination sites increased depending
on the Ca
2+
concentration and reaction time. These findings
suggest that some of the arginine residues in the “nonproductive”
form of PAD3 would be autocitrullinated. Furthermore, most of the
autocitrullinated sites in PAD3 were located near the substrate-binding
site. Given the high Ca
2+
concentration in the crystallization
condition, it is likely that Arg372 was citrullinated in the “nonproductive”
PAD3 structure, the structure was slightly altered from the active
form by citrulline residues, and probably inhibited Ca
2+
-ion binding at the proper position. Following Arg372 citrullination,
PAD3 enters an inactive form; however, the Arg372-citrullinated PAD3
are considered minor components in autocitrullinated PAD3 (CitPAD3),
and CitPAD3 does not significantly decrease the enzyme activity. Autocitrullination
of PAD3 could not be confirmed at the low Ca
2+
concentrations
seen
in vivo
. Future experiments using cells and
animals are needed to verify the effect of Ca
2+
on the
PAD3 structure and functions
in vivo
.