Abstract. We previously identified BASP1 and SRD5A2 as novel hepatocellular carcinoma (HCC) methylation markers from among more than 10,000 screened genes. The present study aimed to improve the diagnostic potential of these genes. We compared the methylation status at distinct regions of the BASP1 and SRD5A2 genes using quantitative methylationspecific PCR, in 46 sets of HCC and corresponding non-tumor liver tissues. We also examined how their epigenetic status affected transcript levels in tissues and several hepatoma cell lines. We found that BASP1 and SRD5A2 loci were methylated in greater than 50% of the HCC tissues. Inverse correlations were identified between the methylation status and transcript levels in the tissues. Assessment of CpG island methylation rate of BASP1 and SRD5A2 resulted in different diagnostic powers for discriminating HCC even in the same CpG island. A combination analysis of BASP1 and SRD5A2 resulted in the optimum diagnostic performance (84.8% sensitivity and 91.3% specificity) with a maximal area under the receiver operating characteristic curve of 0.878. Even in patients with early HCC (well-differentiated, TNM stage I and small in diameter) and those negative for serum ·-fetoprotein, combination analysis enabled an accurate diagnosis of HCC. In vitro analysis also showed that BASP1 and SRD5A2 transcripts were epigenetically regulated by methylation and acetylation. These results suggest that combined analysis of methylated BASP1 and SRD5A2 may prove useful in the accurate diagnosis of HCC, especially early HCC.
IntroductionHepatocellular carcinoma (HCC) may develop from chronic liver diseases caused by hepatitis C virus (HCV) or hepatitis B virus (HBV) infection, and represents a major international health problem due to its increasing incidence in many countries (1,2). HCC is also one of the most common fatal cancers identified worldwide, as the vast majority of cases are first diagnosed at an advanced stage since a reliable diagnostic test for the detection of HCC, among at-risk individuals with chronic hepatitis and liver cirrhosis, is currently unavailable (1,2). To date, ·-fetoprotein (AFP) and protein induced by vitamin K absence or antagonist-II (PIVKA-II) have served as the predominant markers used in the screening for HCC (3). However, these tumor markers exhibit numerous limitations in the early detection of HCC. The identification of robust biomarkers for early diagnosis of HCC is urgently required.Several investigators have hypothesized that not only genetic mutation, but also epigenetic alterations, including aberrant methylation on CpG islands, is a fundamental contributor to carcinogenesis and tumor progression (3-5). Numerous studies have documented aberrant methylation of CpG islands in various cancers including HCC (6-11), supporting the hypothesis that detection of methylation on specific genes derived from cancer cells may be useful for accurate cancer diagnosis.Our recent genome-wide study identified DNA methylation at the Brain abundant, membrane attached sig...