Cryptochromes are sensory blue light receptors mediating various responses in plants and animals. Studies on the mechanism of plant cryptochromes have been focused on the flowering plant Arabidopsis. In the genome of the unicellular green alga Chlamydomonas reinhardtii, a single plant cryptochrome, Chlamydomonas photolyase homologue 1 (CPH1), has been identified. The N-terminal 500 amino acids comprise the lightsensitive domain of CPH1 linked to a C-terminal extension of similar size. We have expressed the light-sensitive domain heterologously in Escherichia coli in high yield and purity. The 59-kDa protein bears exclusively flavin adenine dinucleotide in its oxidized state. Illumination with blue light induces formation of a neutral flavin radical with absorption maxima at 540 and 580 nm. The reaction proceeds aerobically even in the absence of an exogenous electron donor, which suggests that it reflects a physiological response. The process is completely reversible in the dark and exhibits a decay time constant of 200 s in the presence of oxygen. Binding of ATP strongly stabilizes the radical state after illumination and impedes the dark recovery. Thus, ATP binding has functional significance for plant cryptochromes and does not merely result from structural homology to DNA photolyase. The light-sensitive domain responds to illumination by an increase in phosphorylation. The autophosphorylation takes place although the protein is lacking its native C-terminal extension. This finding indicates that the extension is dispensable for autophosphorylation, despite the role it has been assigned in mediating signal transduction in Arabidopsis.Blue light governs many responses of organisms to environmental conditions. Cryptochromes have been shown to act as sensory blue light photoreceptors in plants and animals, with their action being as diverse as their origin (1). From sequence analysis, cryptochromes have been divided into three subgroups: animal, plant, and DASH cryptochromes (2). Animal cryptochrome synchronizes the circadian clock of Drosophila to the 24-h rhythm (3). In mammals, cryptochrome has been suggested to be involved in circadian entrainment (4), and it functions independent of light as a main component of the biological clock. Arabidopsis cryptochromes 1 and 2 (AtCRY1 2 and AtCRY2) mediate de-etiolation responses, entrain the circadian clock, trigger programmed cell death induced by singlet oxygen, and regulate flowering time, stomatal opening, and production of anthocyanin (5-8). DASH cryptochromes are mostly found in bacteria but also in Neurospora crassa, aquatic vertebrates (9), and Arabidopsis (AtCRY3) (10). Their putative role as sensory receptors has recently been challenged by showing that they act as repair enzymes for single-stranded DNA (11).The 500 N-terminal amino acids constitute the photolyase homology region (PHR) with reference to the DNA repairing enzyme. In this domain all cryptochromes characterized so far carry flavin adenine dinucleotide (FAD) as light-sensitive chromophore (2, 1...