Cryptophytes are unicellular photosynthetic algae that use a lumenally located light-harvesting system, which is distinct from the phycobilisome structure found in cyanobacteria and red algae. One of the key components of this system is water-soluble phycoerythrin (PE) 545 whose expression is enhanced by low light levels. The crystal structure of the heterodimeric ␣ 1 ␣ 2  PE 545 from the marine cryptophyte Rhodomonas CS24 has been determined at 1.63-Å resolution. Although the -chain structure is similar to the ␣ and  chains of other known phycobiliproteins, the overall structure of PE 545 is novel with the ␣ chains forming a simple extended fold with an antiparallel -ribbon followed by an ␣-helix. The two doubly linked 50͞61 chromophores (one on each  subunit) are in van der Waals contact, suggesting that exciton-coupling mechanisms may alter their spectral properties. Each ␣ subunit carries a covalently linked 15,16-dihydrobiliverdin chromophore that is likely to be the final energy acceptor. The architecture of the heterodimer suggests that PE 545 may dock to an acceptor protein via a deep cleft and that energy may be transferred via this intermediary protein to the reaction center.Light-harvesting proteins increase the efficiency of photosynthetic organisms growing in low-light regimes. They act as antennae, capturing photons over a broad frequency spectrum and transferring energy to membrane-bound reaction centers (1). In cyanobacteria and red algae, the light-harvesting phycobiliproteins (PBPs) are water soluble and organized into phycobilisomes (large, multiprotein complexes bound to the stromal face of the thylakoids). Individual PBPs and phycobilisomes have been studied by x-ray crystallography (2-11) and electron microscopy (12, 13) as well as biochemically (14). The individual proteins are structurally conserved with a basic ␣ unit (referred to by convention as monomer) arranged around a 3-fold axis forming an (␣) 3 trimer. Cryptophyte algae also use PBPs to harvest light but these differ from those of the cyanobacteria and red algae in several significant ways (15). In any one species, there is only one type of PBP, either phycocyanin (PC) or phycoerythrin (PE); allophycocyanin is never present. The PC or PE is not organized into a phycobilisome but is instead located in the thylakoid lumen (16)(17)(18). Although the  subunits of cryptophyte PBPs share a high degree of sequence identity with both the ␣ and  subunits of cyanobacterial and red algal PBPs (19), the ␣ subunits are shorter, unrelated to other proteins in the sequence databases and carry a single, spectroscopically distinct bilin chromophore (20,21). Structurally, they also differ in being ␣ 1 ␣ 2  dimers rather than (␣) 3 trimers. We report here the structure at 1.63 Å of PE 545 from the marine cryptophyte Rhodomonas (formerly Chroomonas) CS24.
METHODSProtein Preparation and Crystallization. PE 545 was purified (22) from Rhodomonas CS24 (Commonwealth Scientific and Industrial Research Organization, Division of Fishe...