SummaryThe photosensitive molecule rhodopsin and its relatives consist of a protein moiety -an opsinand a non-protein moiety -the chromophore retinal. Opsins, which are G-protein-coupled receptors (GPCRs), are found in animals, and more than a thousand have been identified so far. Detailed molecular phylogenetic analyses show that the opsin family is divided into seven subfamilies, which correspond well to functional classifications within the family: the vertebrate visual (transducin-coupled) and non-visual opsin subfamily, the encephalopsin/tmt-opsin subfamily, the G q -coupled opsin/melanopsin subfamily, the G o -coupled opsin subfamily, the neuropsin subfamily, the peropsin subfamily and the retinal photoisomerase subfamily. The subfamilies diversified before the deuterostomes (including vertebrates) split from the protostomes (most invertebrates), suggesting that a common animal ancestor had multiple opsin genes. Opsins have a seven-transmembrane structure similar to that of other GPCRs, but are distinguished by a lysine residue that is a retinal-binding site in the seventh helix. Accumulated evidence suggests that most opsins act as pigments that activate G proteins in a light-dependent manner in both visual and non-visual systems, whereas a few serve as retinal photoisomerases, generating the chromophore used by other opsins, and some opsins have unknown functions. Opsins are membrane proteins with molecular masses of 30-50 kDa that are related to the protein moiety of the photoreceptive molecule rhodopsin; they typically act as light sensors in animals [1][2][3][4]. Photoreceptive proteins similar to the animal opsins in three-dimensional structure but not in amino-acid sequence have been found in archaea, bacteria, fungi, and a green alga, Chlamydomonas reinhardtii [5,6]. These non-animal opsins function as lightdriven ion pumps or light sensors but there is no evidence that they are structurally related to animal opsins, so they are not considered further here.
Gene organization and evolutionary historySince the first sequence of an opsin, bovine rhodopsin, was determined by conventional protein sequencing in 1982 [7,8] and cDNA sequencing in 1983 [9], more than 1,000 opsins have been identified. The molecular phylogenetic tree shows three large clusters, and detailed analyses have revealed that the opsin family is divided into seven subfamilies; there is less than about 25% amino-acid similarity between subfamilies but more than about 40% among members of a single family (Figure 1). The division into subfamilies corresponds well to functional classification of opsins, which is based partly on the type of G protein coupled to each of these G-protein-coupled receptors (GPCRs). The seven subfamilies are as follows: the vertebrate visual (transducin-coupled) and nonvisual opsin subfamily; the encephalopsin/tmt-opsin subfamily; the G q -coupled opsin/melanopsin subfamily; the G o -coupled opsin subfamily; the peropsin subfamily; the retinal photoisomerase subfamily; and the neuropsin subfamily. Members of...