The reactivity of phosphonate ester probes with several available proteolytic antibody (Ab) fragments was characterized. Irreversible, active site-directed inhibition of the peptidase activity was evident. Stable phosphonate diester-Ab adducts were resolved by column chromatography and denaturing electrophoresis. Biotinylated phosphonate esters were applied for chemical capture of phage particles displaying Fv and light chain repertoires. Selected Ab fragments displayed enriched catalytic activity inhibitable by the selection reagent. Somewhat unexpectedly, a phosphonate monoester also formed stable adducts with the Abs. Improved catalytic activity of phage Abs selected by monoester binding was evident. Turnover values (k cat ) for a selected Fv construct and a light chain against their preferred model peptide substrates were 0.5 and 0.2 min
؊1, respectively, and the corresponding Michaelis-Menten constants (K m ) were 10 and 8 M. The covalent reactivity of Abs with phosphonate esters suggests their ability to recapitulate the catalytic mechanism utilized by classical serine proteases.
Abs1 and Ab L chains are reported to catalyze the cleavage of VIP (1, 2), the HIV coat proteins gp41 (3) and gp120 (4), Arg-vasopressin (5), thyroglobulin (6), factor VIII (7), prothrombin (8), and various model peptidase substrates (5, 9, 10). Recent studies suggest that the peptidase activity is a heritable function encoded by a germ line variable region gene(s) (11,12). In principle, the immune system may be capable of recruiting the catalyst-encoding germ line V gene(s) to elaborate specific proteolytic Abs directed to diverse polypeptide antigens, much as noncatalytic Abs capable of high affinity binding to different antigens can be developed by somatic sequence diversification of the same germ line V genes. Introduction of single replacement mutations in Ab combining sites can result in gain of proteolytic (13) and esterase (14) activities, underscoring the potential contributions of variable region diversification in maturation of Ab catalytic activities.The presence of a serine protease-like catalytic triad in a model proteolytic Ab L chain has previously been deduced from site-directed mutagenesis studies (15). Formation of a covalent complex between the nucleophilic serine residue and the substrate (the acyl-enzyme intermediate) is an essential step en route to peptide bond cleavage by non-Ab serine proteases (16). Phosphonate diesters, like the classical inhibitor DFP, can bind the active site of non-Ab serine proteases and serine esterases covalently (17)(18)(19). In comparison, negatively charged phosphonate monoesters have traditionally been assumed to bind esterolytic Abs (20, 21) and non-Ab serine esterases (22) via noncovalent electrostatic interactions. The aim of the present study was to characterize the reactivity of recombinant proteolytic Abs with phosphonate diesters and monoesters. Irreversible, active site-directed inhibition of catalytic activity by the phosphonate diesters was evident; stable Ab-phosphon...