2021
DOI: 10.3390/molecules26040809
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Chemical Profiles and Pharmacological Properties with in Silico Studies on Elatostema papillosum Wedd

Abstract: The current study attempted, for the first time, to qualitatively and quantitatively determine the phytochemical components of Elatostema papillosum methanol extract and their biological activities. The present study represents an effort to correlate our previously reported biological activities with a computational study, including molecular docking, and ADME/T (absorption, distribution, metabolism, and excretion/toxicity) analyses, to identify the phytochemicals that are potentially responsible for the antio… Show more

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Cited by 24 publications
(10 citation statements)
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“…The simulation trajectories were saved after every 100 ps and the final simulation run was conducted for 100 ns ( Krieger and Vriend, 2015 ). The simulation trajectories were utilized to analyze the root-mean-square deviation, the solvent-accessible surface area, the radius of gyration, and hydrogen bonding ( Chowdhury et al, 2020 , Munia et al, 2021 , Pramanik et al, 2021 , Rakib et al, 2021 , Uddin et al, 2021 ).…”
Section: Methodsmentioning
confidence: 99%
“…The simulation trajectories were saved after every 100 ps and the final simulation run was conducted for 100 ns ( Krieger and Vriend, 2015 ). The simulation trajectories were utilized to analyze the root-mean-square deviation, the solvent-accessible surface area, the radius of gyration, and hydrogen bonding ( Chowdhury et al, 2020 , Munia et al, 2021 , Pramanik et al, 2021 , Rakib et al, 2021 , Uddin et al, 2021 ).…”
Section: Methodsmentioning
confidence: 99%
“…By following constant pressure and Berendsen thermostat, the simulation was conducted for 150 ns. The simulation trajectories were utilized to calculate the root mean square deviations and root means square fluctuations, solvent accessible surface area, gyration radius, and hydrogen bond [64][65][66][67].…”
Section: Molecular Dynamics Simulationmentioning
confidence: 99%
“…The final simulation was ran for 100 ns ( Krieger and Vriend, 2015 ) while adhering to constant pressure and Berendsen thermostat. The root mean square deviation, solvent accessible surface area, radius of gyration, and hydrogen bond were studied using simulation trajectories ( Afrose et al, 2021 , Chowdhury et al, 2021 , Mahmud et al, 2021d , 2021e, 2021a; “Molecular docking and dynamics study to explore phytochemical ligand molecules against the main protease of SARS-CoV-2 from extensive phytochemical datasets,” n.d., “Screening of Potent Phytochemical Inhibitors Against SARS-CoV-2 Main Protease: An Integrative Computational Approach,” n.d.; Pramanik et al, 2021 , Rakib et al, 2021 , Uddin et al, 2021 )…”
Section: Methodsmentioning
confidence: 99%