The motion of a composite system made of N particles is examined in a space with a canonical noncommutative algebra of coordinates. It is found that the coordinates of the center-of-mass position satisfy noncommutative algebra with effective parameter. Therefore, the upper bound of the parameter of noncommutativity is re-examined. We conclude that the weak equivalence principle is violated in the case of a non-uniform gravitational field and propose the condition for the recovery of this principle in noncommutative space. Furthermore, the same condition is derived from the independence of kinetic energy on the composition.