Autoprocessing of the precursor form of human herpesvirus 6 (HHV-6) proteinase at two sites (termed M and R) is required to generate the mature enzyme. Kinetic constants were determined for the hydrolysis of a series of synthetic peptide substrates by mature HHV-6 proteinase, purified to homogeneity. Truncation or replacement of individual residues in peptides mimicking the R-site sequence, indicated that the minimum length for effective hydrolysis by the viral enzyme was P 4 -P 3 -P 2 -Ala*Ser-P 2 -P 3 -P 4 and revealed the importance of the P 1 Ala and P 4 Tyr residues. Consequently, relevant (P 1 or P 4 ) mutations were introduced into the precursor form of the proteinase and the ability of these altered proteins to autoprocess was examined. Introduction of Val in place of the P 1 Ala at the M-site essentially abrogated cleavage but mature HHV-6 proteinase was still generated by cleavage at the R-site, indicating that processing of the M-site is not a prerequisite for cleavage of the R-site in the precursor. At the R-site, mutation of the P 1 Ala, or of the preceding P 4 Tyr residue, prevented processing at the R-site in the precursor so that the mature form of HHV-6 proteinase was not generated. The accumulated data suggest a possible new approach to the design of inhibitors for therapeutic intervention in the life cycle of herpesviruses.Eight herpesviruses have been implicated to date in the etiology of a number of human diseases. These are subdivided into three families on the basis of their biological properties, host cell range and the organization of their genomes (1). Herpes simplex virus type 1 (HSV-1) 1 and type 2 (HSV-2) and varicella zoster virus (VZV), the causative agent of chicken pox and shingles, comprise the ␣-subgroup while Epstein-Barr virus and the recently discovered human herpesvirus 8 (which has been implicated in Kaposi's sarcoma in human immunodeficiency virus-positive individuals; Ref. 2) constitute the ␥-subfamily. The -subgroup consists of human cytomegalovirus (HCMV) and human herpesviruses 6 and 7 (HHV-6 and HHV-7). HHV-6 causes the childhood illness exanthem subitum (3) and has also been implicated in the progression of a number of other diseases, including multiple sclerosis (4) and chronic fatigue syndrome (5).In common with the other herpesviruses, HHV-6 encodes its own proteinase, which is essential for capsid maturation, DNA packaging, and the ultimate formation of new virus particles (6). The mature proteinase consists of 230 residues but is synthesized in the form of a precursor, which has an additional 298 residues attached to the C terminus of the mature enzyme (see Ref. 7 and Fig. 1). Autolytic removal of these residues (which themselves constitute a form of the viral assembly protein; Ref. 6) releases the N-terminal proteinase in its mature form; processing takes place at two locations positioned, respectively, at the C terminus of the proteinase (R-site; Fig. 1) and 37 residues from the C terminus of the precursor (M-site; Fig. 1). In the HHV-6 precursor, just as ...