Characterization of the complete mitochondrial genomes of two species of the genus Aphaena Guérin-Méneville (Hemiptera: Fulgoridae) and its phylogenetic implications

Wang, Wenqian; Huang, Yi-Xin; Bartlett, Charles R.; Zhou, Fanmei; Meng, Rui; Qin, Dao‐Zheng

doi:10.1016/j.ijbiomac.2019.08.222

Cited by 22 publications

(31 citation statements)

References 53 publications

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“…The codon usage analysis shows that the third codon positions were more likely A or T than G or C. The most frequently used codons were UUA (Leu2), AUA (Met), AUU (Ile), and UUU (Phe), all composed of just A or U. The codon usage in these four Flatidae is consistent with usage in other planthoppers [ 13 , 14 , 24 ]. In addition, the codons CCG (Pro), ACG (Thr), and GCG (Ala) were missing in Zecheuna tonkinensis .…”

Section: Resultssupporting

confidence: 69%

“…However, the phylogenetic relationships among these planthopper families still remain uncertain based on earlier morphological and molecular analyses [ 8 , 9 , 10 ]. Recently, mitogenome data have been more widely applied to studies of planthopper phylogeny based on the lower costs of high-throughput sequencing [ 11 , 12 , 13 , 14 , 15 ].…”

Section: Introductionmentioning

confidence: 99%

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Characterization of Three Complete Mitogenomes of Flatidae (Hemiptera: Fulgoroidea) and Compositional Heterogeneity Analysis in the Planthoppers’ Mitochondrial Phylogenomics

Peng

Qin

et al. 2021

IJMS

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Although sequences of mitogenomes have been widely used for investigating phylogenetic relationship, population genetics, and biogeography in many members of Fulgoroidea, only one complete mitogenome of a member of Flatidae has been sequenced. Here, the complete mitogenomes of Cerynia lineola, Cromna sinensis, and Zecheuna tonkinensis are sequenced. The gene arrangements of the three new mitogenomes are consistent with ancestral insect mitogenomes. The strategy of using mitogenomes in phylogenetics remains in dispute due to the heterogeneity in base composition and the possible variation in evolutionary rates. In this study, we found compositional heterogeneity and variable evolutionary rates among planthopper mitogenomes. Phylogenetic analysis based on site-homogeneous models showed that the families (Delphacidae and Derbidae) with high values of Ka/Ks and A + T content tended to fall together at a basal position on the trees. Using a site-heterogeneous mixture CAT + GTR model implemented in PhyloBayes yielded almost the same topology. Our results recovered the monophyly of Fulgoroidea. In this study, we apply the heterogeneous mixture model to the planthoppers' phylogenetic analysis for the first time. Our study is based on a large sample and provides a methodological reference for future phylogenetic studies of Fulgoroidea.

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Section: Resultssupporting

confidence: 69%

Section: Introductionmentioning

confidence: 99%

Characterization of Three Complete Mitogenomes of Flatidae (Hemiptera: Fulgoroidea) and Compositional Heterogeneity Analysis in the Planthoppers’ Mitochondrial Phylogenomics

Peng

Qin

et al. 2021

IJMS

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“…Moreover, there were some kinds of unmatched base pairs (Figures 4 and 5). These two structural characteristics are also present in other leafhoppers [40,48,49,[66][67][68][69]. In the predicted secondary structure, the length of the anticodon loop of all tRNAs was highly conserved for 7 bp, compared to the variable sizes of the DHU and TΨC loops.…”

Section: Transfer and Ribosomal Rna Genesmentioning

confidence: 74%

Characterization of Two Complete Mitochondrial Genomes of Atkinsoniella (Hemiptera: Cicadellidae: Cicadellinae) and the Phylogenetic Implications

Jiang

et al. 2021

Insects

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The complete mitochondrial genomes of Atkinsoniella grahami and Atkinsoniella xanthonota were sequenced. The results showed that the mitogenomes of these two species are 15,621 and 15,895 bp in length, with A+T contents of 78.6% and 78.4%, respectively. Both mitogenomes contain 13 protein-coding genes (PCGs), 22 transfer RNA genes (tRNAs), 2 ribosomal RNA genes (rRNAs), and a control region (CR). For all PCGs, a standard start ATN codon (ATT, ATG, or ATA) was found at the initiation site, except for ATP8, for which translation is initiated with a TTG codon. All PCGs terminate with a complete TAA or TAG stop codon, except for COX2, which terminates with an incomplete stop codon T. All tRNAs have the typical cloverleaf secondary structure, except for trnS, which has a reduced dihydrouridine arm. Furthermore, these phylogenetic analyses were reconstructed based on 13 PCGs and two rRNA genes of 73 mitochondrial genome sequences, with both the maximum likelihood (ML) and Bayesian inference (BI) methods. The obtained mitogenome sequences in this study will promote research into the classification, population genetics, and evolution of Cicadellinae insects in the future.

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“…The codon GCG (Ala) has not been found in C. cassiae, and this codon deletion has been observed in existing studies. For example, the Ricania speculum of the Ricaniidae family lacks Thr (ACG), and Aphaena discolors nigrotibiata of the Fulgoridae family lacks CCG (Pro), GCG (Ala), ACG (Thr) three codons 46,47 . In addition, both species showed greater codon preference.…”

Section: Resultsmentioning

confidence: 99%

Mitogenome and Phylogenetic Analysis of Typhlocybine Leafhoppers (Hemiptera: Cicadellidae)

Jiang

Chen

et al. 2021

Preprint

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Mitogenomes play an active role in determining the relationship between insect phylogeny and evolution and solve some problems encountered in traditional morphological classification. In order to increase the mitogenome data of leafhoppers the mitogenomes of Cassianeura cassiae and C. bimaculata were sequenced in this study and found to be 15,423 bp and 14,597 bp in length respectively. The gene structure was found to be similar to other published leafhopper mitogenomes, but we found the length of the control region of C. bimaculata to be the shortest in existing studies. The phylogenetic analysis of 13 PCGs resulted in a well-supported tree topology but species in Typhlocybini and Zyginellini were mixed. Meanwhile, this study also provided the phylogenetic analysis based on the body external morphology, female genitalia morphology and male genitalia morphology of 9 species of Typhlocybinae. The results showed that the female sternite VII of different species is quite different, but the female valvulae of different species in the same genus shows a certain consistency. The morphological phylogenetic tree is basically the same structure as the molecular phylogenetic tree. In the two different kinds of phylogenetic trees, Typhlocybini and Zyginellini clustered into one clade, showing a more closed relationship.

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Characterization of the complete mitochondrial genomes of two species of the genus Aphaena Guérin-Méneville (Hemiptera: Fulgoridae) and its phylogenetic implications

Cited by 22 publications

References 53 publications

Characterization of Three Complete Mitogenomes of Flatidae (Hemiptera: Fulgoroidea) and Compositional Heterogeneity Analysis in the Planthoppers’ Mitochondrial Phylogenomics

Characterization of Three Complete Mitogenomes of Flatidae (Hemiptera: Fulgoroidea) and Compositional Heterogeneity Analysis in the Planthoppers’ Mitochondrial Phylogenomics

Characterization of Two Complete Mitochondrial Genomes of Atkinsoniella (Hemiptera: Cicadellidae: Cicadellinae) and the Phylogenetic Implications

Mitogenome and Phylogenetic Analysis of Typhlocybine Leafhoppers (Hemiptera: Cicadellidae)

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