In polyomaviruses the pentameric capsomers are interlinked by the long C-terminal arm of the structural protein VP1. The T7؍ icosahedral structure of these viruses is possible due to an intriguing adaptability of this linker arm to the different local environments in the capsid. To explore the assembly process, we have compared the structure of two virus-like particles (VLPs) formed, as we found, in a calcium-dependent manner by the VP1 protein of human polyomavirus BK. The structures were determined using electron cryomicroscopy (cryo-EM), and the three-dimensional reconstructions were interpreted by atomic modeling. In the small VP1 particle, 26.4 nm in diameter, the pentameric capsomers form an icosahedral T1؍ surface lattice with meeting densities at the threefold axes that interlinked three capsomers. In the larger particle, 50.6 nm in diameter, the capsomers form a T7؍ icosahedral shell with three unique contacts. A folding model of the BKV VP1 protein was obtained by alignment with the VP1 protein of simian virus 40 (SV40). The model fitted well into the cryo-EM density of the T7؍ particle. However, residues 297 to 362 of the C-terminal arm had to be remodeled to accommodate the higher curvature of the T1؍ particle. The loops, before and after the C-terminal short helix, were shown to provide the hinges that allowed curvature variation in the particle shell. The meeting densities seen at the threefold axes in the T1؍ particle were consistent with the triple-helix interlinking contact at the local threefold axes in the T7؍ structure.The BK virus (BKV) is a human virus belonging to the Polyomaviridae family. It is a nonenveloped virus (ϳ50.0 nm in diameter) with a circular double-stranded DNA genome (ϳ5 kb). The capsid has icosahedral symmetry and is built of 72 capsomers that are all pentamers of the protein VP1 arranged in a Tϭ7 icosahedral lattice (21). All known polyomaviruses have three structural proteins (VP1, VP2, and VP3), of which VP1 is the major capsid protein. Overall amino acid sequence homology between BKV and the other human polyomavirus, JCV, is 75%, and that with the simian polyomavirus (SV40) is 69% (9). In the VP1 protein the sequence similarity rises to 77% and 74% for the JCV and SV40, respectively (35). Due to the high similarity, the solved atomic structure of VP1 of SV40 provides us a template to create a model of the BKV VP1 protein folding.The structures of the SV40 and murine polyomavirus have been determined and show similar features to that seen in the BKV (1, 12). The VP1 pentamer of SV40 and murine polyomavirus is built as a ring of five -barrel-shaped VP1 monomers, tightly linked by interacting loops between the framework of -strands (22,33,34,40). The C-terminal subdomain of each VP1 monomer "invades" a neighboring pentamer, thereby tying the pentamers together in the virion shell. There are six unique monomers building up the capsid (monomer ␣, ␣Ј, and ␣Љ at the local threefold; , Ј around the icosahedral threefold, and ␥ at the twofold) (34). The major s...