Abstract:.
Significance:
The Mueller matrix decomposition method is widely used for the analysis of biological samples. However, its presumed sequential appearance of the basic optical effects (e.g., dichroism, retardance, and depolarization) limits its accuracy and application.
Aim:
An approach is proposed for detecting and classifying human melanoma and non-melanoma skin cancer lesions based on the characteristics of the Mueller matrix elements and a random forest (RF) … Show more
“…However, multiple studies highlighting inadequate performance of most of these tests, along with their high costs 9 , 10 , drive the search for alternative sources of prognostic information. In this context, increasing evidence supports the prognostic value contained within the tumour micro-environment, such as tumour stromal architecture 11 – 15 , more specifically desmoplasia or the desmoplastic response (DR) 16 – 19 . DR is associated with the growth and structural remodeling of collagenous stroma in the most invasive tumour front regions.…”
Section: Introductionmentioning
confidence: 99%
“…However, these properties may not directly highlight the underlying structure and arrangement of collagen within the tissue sample, and thus much work has gone into interpreting and correlating the observed polarimetric parameter changes with their core biological or biophysical meaning. Yet with the advancement of artificial intelligence (AI) in recent years, an alternative to this detailed understanding/interpretation has emerged whereby researchers have used various machine and deep learning techniques to directly link up the rich biological information from the polarization properties with clinical diagnosis and prognosis 15 , 27 – 33 .…”
Using a novel variant of polarized light microscopy for high-contrast imaging and quantification of unstained histology slides, the current study assesses the prognostic potential of peri-tumoral collagenous stroma architecture in 32 human stage III colorectal cancer (CRC) patient samples. We analyze three distinct polarimetrically-derived images and their associated texture features, explore different unsupervised clustering algorithm models to group the data, and compare the resultant groupings with patient survival. The results demonstrate an appreciable total accuracy of ~ 78% with significant separation (p < 0.05) across all approaches for the binary classification of 5-year patient survival outcomes. Surviving patients preferentially belonged to Cluster 1 irrespective of model approach, suggesting similar stromal microstructural characteristics in this sub-population. The results suggest that polarimetrically-derived stromal biomarkers may possess prognostic value that could improve clinical management/treatment stratification in CRC patients.
“…However, multiple studies highlighting inadequate performance of most of these tests, along with their high costs 9 , 10 , drive the search for alternative sources of prognostic information. In this context, increasing evidence supports the prognostic value contained within the tumour micro-environment, such as tumour stromal architecture 11 – 15 , more specifically desmoplasia or the desmoplastic response (DR) 16 – 19 . DR is associated with the growth and structural remodeling of collagenous stroma in the most invasive tumour front regions.…”
Section: Introductionmentioning
confidence: 99%
“…However, these properties may not directly highlight the underlying structure and arrangement of collagen within the tissue sample, and thus much work has gone into interpreting and correlating the observed polarimetric parameter changes with their core biological or biophysical meaning. Yet with the advancement of artificial intelligence (AI) in recent years, an alternative to this detailed understanding/interpretation has emerged whereby researchers have used various machine and deep learning techniques to directly link up the rich biological information from the polarization properties with clinical diagnosis and prognosis 15 , 27 – 33 .…”
Using a novel variant of polarized light microscopy for high-contrast imaging and quantification of unstained histology slides, the current study assesses the prognostic potential of peri-tumoral collagenous stroma architecture in 32 human stage III colorectal cancer (CRC) patient samples. We analyze three distinct polarimetrically-derived images and their associated texture features, explore different unsupervised clustering algorithm models to group the data, and compare the resultant groupings with patient survival. The results demonstrate an appreciable total accuracy of ~ 78% with significant separation (p < 0.05) across all approaches for the binary classification of 5-year patient survival outcomes. Surviving patients preferentially belonged to Cluster 1 irrespective of model approach, suggesting similar stromal microstructural characteristics in this sub-population. The results suggest that polarimetrically-derived stromal biomarkers may possess prognostic value that could improve clinical management/treatment stratification in CRC patients.
“…The latter could be utilized to mimic human-like intellect when handling large and complex datasets, images, etc. Being part of AI, the vastly expanding field of machine learning (ML) covers a wide spectrum of applications for solving multiple scientific problems [47][48][49][50][51][52][53] as well as for cancer classification [54][55][56][57][58][59][60][61][62]. Since conventional programming processes an input data by means of particular syntax and semantics to produce a desired output, such a method is prone to multiple errors repetition.…”
In biophotonics, novel techniques and approaches are being constantly sought to assist medical doctors and to increase both sensitivity and specificity of the existing diagnostic methods. In such context, tissue polarimetry holds promise to become a valuable optical diagnostic technique as it is sensitive to tissue alterations caused by different benign and malignant formations. In our studies, multiple Mueller matrices were recorded for formalin-fixed, human, ex vivo colon specimens containing healthy and tumor zones. The available data were pre-processed to filter noise and experimental errors, and then all Mueller matrices were decomposed to derive polarimetric quantities sensitive to malignant formations in tissues. In addition, the Poincaré sphere representation of the experimental results was implemented. We also used the canonical and natural indices of polarimetric purity depolarization spaces for plotting our experimental data. A feature selection was used to perform a statistical analysis and normalization procedure on the available data, in order to create a polarimetric model for colon cancer assessment with strong predictors. Both unsupervised (principal component analysis) and supervised (logistic regression, random forest, and support vector machines) machine learning algorithms were used to extract particular features from the model and for classification purposes. The results from logistic regression allowed to evaluate the best polarimetric quantities for tumor detection, while the use of random forest yielded the highest accuracy values. Attention was paid to the correlation between the predictors in the model as well as both losses and relative risk of misclassification. Apart from the mathematical interpretation of the polarimetric quantities, the presented polarimetric model was able to support the physical interpretation of the results from previous studies and relate the latter to the samples’ health condition, respectively.
“… 31 , 32 Recently, the same group developed a polarization technique for dengue virus detection 33 and skin cancer detection using deep learning techniques based on polarization properties. 34 , 35 In this study, a combination of MMIP and AI classification framework was utilized to perform HBV detection in human blood serum samples in the reflectance configuration. The MMIP technique was first employed to extract Mueller matrix images of 274 blood serum samples, comprising 138 HBsAg-containing (positive) samples and 136 HBsAg-free (negative) samples, respectively.…”
Section: Introductionmentioning
confidence: 99%
“…It is noted that the proposed approach in this study based on polarimetry imaging in reflectance configuration provides more versatile information than that based on an absolute value from one single point of the previous studies. 34 , 35 Furthermore, it is more useful for the development of classification algorithms and noninvasive techniques for biosensing applications.…”
.
Significance:
The combination of polarized imaging with artificial intelligence (AI) technology has provided a powerful tool for performing an objective and precise diagnosis in medicine.
Aim:
An approach is proposed for the detection of hepatitis B (HB) virus using a combined Mueller matrix imaging technique and deep learning method.
Approach:
In the proposed approach, Mueller matrix imaging polarimetry is applied to obtain
Mueller matrix images of 138 HBsAg-containing (positive) serum samples and 136 HBsAg-free (negative) serum samples. The kernel estimation density results show that, of the 16 Mueller matrix elements, elements
and
provide the best discriminatory power between the positive and negative samples.
Results:
As a result,
and
are taken as the inputs to five different deep learning models: Xception, VGG16, VGG19, ResNet 50, and ResNet150. It is shown that the optimal classification accuracy (94.5%) is obtained using the VGG19 model with element
as the input.
Conclusions:
Overall, the results confirm that the proposed hybrid Mueller matrix imaging and AI framework provides a simple and effective approach for HB virus detection.
scite is a Brooklyn-based organization that helps researchers better discover and understand research articles through Smart Citations–citations that display the context of the citation and describe whether the article provides supporting or contrasting evidence. scite is used by students and researchers from around the world and is funded in part by the National Science Foundation and the National Institute on Drug Abuse of the National Institutes of Health.