Lipopolysaccharide (LPS) of the Pseudomonas aeruginosa serotype O5 wild-type strain PAO1 and derived rough-type mutant strains AK1401 and AK1012 was isolated by a modified phenol/chloroform/ petroleum-ether extraction method. Deoxycholate/PAGE of the LPS from the rough mutant AK1401 indicated two bands near the dye front with mobilities similar to those of the parent strain, indicating that both LPS contain a complete core and a species comprising a core and one repeating unit. Composition analysis of the LPS from strains PAO1 and AK1401 indicated that the complete core oligosaccharide was composed of D-glucose (four units), L-rhamnose (one unit), 2-amino-2-deoxy-D-galactose (one unit), L-glycero-D-manno-heptose (Hep; two units), 3-deoxy-D-manno-octulosonic acid (Kdo ; two units), L-alanine (one unit) and phosphate (three units). The glycan structure of the LPS was determined by onedimensional and two-dimensional (2D) NMR techniques in combination with MS-based methods on oligosaccharide samples obtained from the LPS by delipidation procedures. The locations of three phosphomonoester groups on the first heptose residue were established by a two-dimensional 31 P (ω 1 )-halffiltered COSY experiment on the reduced core oligosaccharide sample of the LPS from the wild-type strain. The presence of a 7-O-carbamoyl substituent was observed on the second heptose. The structure of the core region of the O-chain-deficient LPS from P. aeruginosa serotype O5 is as follows:A structural model is presented that is also representative of that for P. aeruginosa serotype O6 LPS. A revised structure for the serotype O6 mutant strain A28 is presented.Keywords : Pseudomonas aeruginosa; lipopolysaccharide; core oligosaccharide; structure ; NMR.Pseudomonas aeruginosa is an opportunistic pathogen that affects compromised individuals such as burn victims, and cystic fibrosis and cancer patients. Lipopolysaccharide (LPS) is considered to be one of the major virulence factors of P. aeruginosa [1,2]. As in most of gram-negative bacteria, it forms an essential part of the outer membrane and is the most immunoreactive surface antigen of the organism. LPS of P. aeruginosa shares theCorrespondence to E. Altman, Institute for Biological Sciences, National Research Council of Canada, Ottawa, Ontario K1A OR6, CanadaFax: ϩ1 613 941 1327. E-mail: eleonora.altman@nrc.ca Abbreviations. OS, oligosaccharide; LPS, lipopolysaccharide; Kdo, 3-deoxy-D-manno-octulosonic acid; HPAEC, high performance anion exchange chromatography; FAB, fast-atom bombardment, ES-MS, electrospray mass spectrometry; 1D, one-dimensional; 2D, two-dimensional ; HMQC, heteronuclear multiple-quantum coherence ; Hep, heptose.general architecture found in members of the family Enterobacteriaceae and is composed of three regions: a lipid A moiety; a core oligosaccharide, which can be subdivided into inner and outer core units; and an O-antigen polysaccharide. 20 major serotypes of P. aeruginosa have been described on the basis of the structural diversity of their O-antigens [3,4].It has...