Superinfection exclusion is the ability of an established virus infection toHepatitis C virus (HCV) is an important human pathogen associated with the development of chronic liver disease. It is the type member of the Hepacivirus genus, which in addition to the Pestivirus and Flavivirus genera comprises the family Flaviviridae. Viruses within the family Flaviviridae are enveloped with a single-stranded RNA genome of positive polarity (reviewed in reference 33). Translation of the viral RNA genome is driven by an internal ribosome entry site (IRES), generating a polyprotein that is processed into structural and nonstructural proteins. The structural proteins, core (C), E1, and E2, form the physical virion. The nonstructural proteins, p7-NS2-NS3-NS4A-NS4B-NS5A-NS5B, form the viral replication complex or assist in the assembly of virions.Current understanding of HCV entry, translation, and replication events in cell culture has been learned through the use of HCV full-length and subgenomic replicons (reviewed in reference 2) and retroviral pseudoparticles bearing HCV E1 and E2 glycoproteins (HCVpp) (4,19,24). The recent development of an infectious system that permits the growth of HCV in cell culture (HCVcc) has enabled study of the complete viral life cycle (30,44,51). Both HCVpp and HCVcc entry is mediated by the E1 and E2 envelope glycoproteins, proceeding in a CD81-and pH-dependent manner (23,30,44,50,51).Superinfection exclusion, or homologous interference, is the ability of an established virus infection to interfere with secondary virus infection. Multiple mechanisms that contribute to superinfection exclusion have been demonstrated for various viruses, including interference with receptor-mediated attachment (10,11,41,42) and penetration into cells (39,40,47), as well as downstream replication events (1,22,26). We and others have previously described superinfection exclusion for the Pestivirus bovine viral diarrhea virus (BVDV) (29,35) and established that cells acutely infected with BVDV exhibit blocks to superinfection at both the level of entry and viral RNA replication (29).In this study, we observed that cells acutely infected with HCV genotype 2a chimeric strain J6/JFH and cells harboring HCV RNAs from a range of genotypes were resistant to HCVcc superinfection. Further analysis revealed that superinfection was blocked downstream of viral entry. Unlike cells acutely infected with J6/JFH and cells supporting Con1 and H77 fulllength, and Con1, H77, and JFH subgenomic replicons, cells containing a persistent, full-length J6/JFH replicon were nonpermissive for HCVpp. Study of this HCVpp-resistant, stable J6/JFH replicon population suggested that J6/JFH replication/ infection applies a strong negative selection for CD81-expressing cells. This observation could be mimicked at later time points after infection with J6/JFH HCVcc.
MATERIALS AND METHODSCells and HCV-specific inhibitors. Huh-7.5 cells (9) were maintained in Dulbecco's modified Eagle's medium supplemented with 10% heat-inactivated fetal bovine s...