Characterization of EST-SSR markers in Curcuma kwangsiensis S. K. Lee &amp; C. F. Liang based on RNA sequencing and its application for phylogenetic relationship analysis and core collection construction

Tan

et al. 2023

Plants

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Curcuma is extensively cultivated as a medicinal and ornamental plant in tropical and subtropical regions. Due to the bright bract color, distinctive inflorescence and long blooming period, it has become a new favorite in terms of the urban landscape, potted flowers and cut flowers. However, little research on breeding new cultivars using traditional plant breeding methods is available on the genus Curcuma. In the present study, pollen viability and stigma receptivity evaluation were performed, and the genetic relationship of 38 Curcuma accessions was evaluated, then 5 C. alismatifolia Gagnep. (Ca), 2 C. hybrid (Ch), 2 C. sparganiifolia Gagnep. cultivars and 4 Curcuma native species were selected as parents for subsequent interspecific cross-breeding. A total of 132 reciprocal crosses were carried out for interspecific hybridization, including 70 obverse and 62 inverse crosses. Obvious discrepancies among fruit-setting rates were manifested in different combinations and in reciprocal crosses. Results showed that the highest fruit-setting rate (87.5%) was observed in the Ca combinations. There were 87 combinations with a fruit-setting rate of 0%, which meant nearly 65.9% was incompatible. We concluded that C. alismatifolia ‘Siam Shadow’ (Ch34) was suitable as a male parent and C. petiolata Roxb. (Cpet) was suitable as a female parent to improve the fruit-setting rates. The maximum number of seeds per fruit (45.4) was obtained when C. alismatifolia ‘Chiang Mai Pink’ (Ca01) was used as a female parent followed by C. attenuata Wall. ex Baker (Catt) (42.8) and C. alismatifolia ‘Splash’ (Ca63) (39.6) as male parents. The highest germination rate was observed for the Ca group followed by Catt and C. sparganiifolia ‘Maetang Sunrise’ (Csms). The germination rates of Ca accessions ranged from 58.2% (C. alismatifolia ‘Siam Scarlet’ (Ca06) as a male parent) to 89.3% (C. alismatifolia ‘Sitone’ (Ca10) as a male parent) with an average value of 74.0%. Based on the results of hybrid identification, all the individuals from the four combinations exhibited paternal-specific bands, indicating that the true hybrid rates of crossings were 100%. Our results would facilitate the interspecific hybridization and introduction of genetic variation from wild species into the cultivars in Curcuma in the future, which could be helpful in realizing the sustainable application in urban green areas.

Section: Discussionsupporting

confidence: 90%

Section: Introductionmentioning

confidence: 99%

Cross-Compatibility in Interspecific Hybridization of Different Curcuma Accessions

Tan

et al. 2023

Plants

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“…SSR molecular markers are typically 1–6 bp long nucleotide tandem repeats (Schlotterer, 2004). SSR markers have been developed in many ornamental plants, including Paeonia rockii (Liu & Cheng, 2020), Syringa oblata (Yang et al, 2020), Hemerocallis (Li et al, 2020), Curcuma kwangsiensis (Ye et al, 2021), Hedychium (Zhou et al, 2021), and Gerbera hybirda (Zhou et al, 2021). However, despite their high polymorphism, good repeatability, codominant inheritance, and other advantages, they have been few reports on caladium molecular markers research.…”

Section: Introductionmentioning

confidence: 99%

Diversity, classification, and EST‐SSR‐based association analysis of caladium ornamental traits

Zhu

et al. 2023

Physiologia Plantarum

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Caladium (Caladium × Hortulanum Birdsey) is a popular ornamental plant with a wide range of vibrant leaf color among Araceae. Even after years of breeding, creating new caladium leaf color variations is extremely difficult. Molecular marker‐assisted selection is an effective approach for accelerating breeding, but few studies on the molecular markers associated with caladium traits have been performed. In the current study, 144 caladium accessions were used to examine 12 phenotypic characteristics. The coefficient of variation for four numerical characters ranged from 23.94% to 43.22%, and the Shannon–Wiener indexes for eight descriptive characters ranged from 0.13 to 1.52. Based on L*, a*, b*, C, h° values determined by a colorimeter and hierarchical cluster analysis, the leaf color can be divided into four groups: pale green, green, light pink, and red. Furthermore, 7708 new SSR loci were identified by transcriptome sequencing, and 26 SSR markers with high polymorphism and reproducibility were screened. Genetic structure, NJ clustering, and PCoA analysis revealed that 144 accessions could be divided into three clusters, with genetic structure being closely related to germplasm origin. An association analysis revealed that the SSR markers 2, 1, 1, 1, 1, and 1 were mainly associated with petiole color, main vein color, blade upperside glossiness, and C, b*, and L* of leaf color (p < 0.01). These findings will serve as a valuable reference for evaluating germplasm resources and caladium molecular marker‐assisted breeding.

“…Plants must have rich genetic diversity to better adapt to the environment and increase their survival rate. Only in this way can their advantageous positions in evolution and reproduction be ensured [48]. Thus, it is indispensable to establish resource banks for Caladium core collections, which, to some extent, can reduce the labor force, materials, and financial resources put into the protection of the original germplasms.…”

Section: Discussionmentioning

confidence: 99%

Establishment of DNA Molecular Fingerprint of Caladium Core Collections

Fu²,

et al. 2023

Agriculture

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Caladiums are promising colorful foliage plants due to their unique leaf shapes and dazzling colors. Until now, over 2000 varieties of Caladium have been cultivated worldwide. The long-term natural variation and artificial selection have enriched the germplasm resources of Caladium in the market, yet have blurred its genetic background. In this study, 16 informative EST-SSR markers were used to screen 144 Caladium accessions, indicating that 16 EST-SSRs could distinguish all genotypes with a minimum cumulative identity probability (PI) of 2.0 2 × 10−15. Using the simulated annealing method, the richest genetic information was acquired at the same compression ratio. A final core of 44 accessions was selected, comprising 30.6% of the individuals and retraining more than 95% of the total genetic information. No significant differences were observed in allele frequency distributions or genetic diversity parameters between the core collection and the entire population. Cluster analysis roughly divided the core collections into four populations, where 66.7% of the private alleles were detected in Pop2. Finally, DNA molecular fingerprints of 44 core accessions were established, including barcodes and quick response (QR) code molecular identities (ID). The results will lay a theoretical foundation for identifying, preserving, and utilizing Caladium germplasm resources.