The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species separable by two-dimensional electrophoresis and which we have proposed to represent at least two gene products. Recently, we demonstrated the first known function for the LICs: binding to the centrosomal protein, pericentrin, which represents a novel, non-dynactin-based cargo-binding mechanism. Here we report the cloning of rat LIC1, which is approximately 75% homologous to rat LIC2 and also contains a P-loop consensus sequence. We compared LIC1 and LIC2 for the ability to interact with pericentrin, and found that only LIC1 will bind. A functional P-loop sequence is not required for this interaction. We have mapped the interaction to the central region of both LIC1 and pericentrin. Using recombinant LICs, we found that they form homooligomers, but not heterooligomers, and exhibit mutually exclusive binding to the heavy chain. Additionally, overexpressed pericentrin is seen to interact with endogenous LIC1 exclusively. Together these results demonstrate the existence of two subclasses of cytoplasmic dynein: LIC1-containing dynein, and LIC2-containing dynein, only the former of which is involved in pericentrin association with dynein.Cytoplasmic dynein is a large, multi-subunit complex (1), which functions as a molecular motor that moves cellular components toward the minus ends of microtubules and determines the distribution of many vesicular organelles (2). Cytoplasmic dynein has also been found to be involved in many aspects of mitosis, where it is found at the kinetochore, spindle poles, and cell cortex (3-7).The cytoplasmic dynein complex is composed of four subunit classes: the heavy (HCs), 1 intermediate (ICs), light intermediate (LICs), and light chains (LCs). The dynein heavy chains are large (532 kDa) polypeptides that contain four ATPase domains and are responsible for microtubule binding and catalytic activity (2). The intermediate chains are a diverse set of subunits derived by alternative splicing from two different genes (8). The ICs have been found to be responsible for the interaction of the dynein complex with a second complex called dynactin, which is required for dynein-based motility, by directly binding to the p150Glued dynactin subunit (8, 9). Dynactin is thought to be involved in linking dynein to various organelles in the cell; thus the intermediate chains have been proposed to have an important function in dynein targeting (7). The LCs are a diverse family of low and very low molecular weight subunits (10 -12); a role in subcellular targeting has been proposed (13).The HCs, ICs, and LCs all have homologous counterparts in flagellar and ciliary forms of dynein. The LICs, however, are unique to cytoplasmic dynein. They contain a P-loop consensus sequence of unknown function (14, 15). Two-dimensional electrophoresis of both rat and chicken LICs reveals numerous LIC species, at least some of which result from phosphorylati...