A restriction fragment of Methanococcus thermolithotrophicus genomic DNA was cloned into pUC8 to produce plasmid pET9301, which complements mutations in the hisA gene of Escherichia coli. Sequencing the DNA (2,155 base pairs) cloned from this thermophilic methanogen demonstrated that the M. thermolithotrophicus hisA gene is located within a cluster of open reading frames (ORFs) and is 68 and 69% homologous at the nucleotide level to the hisA genes of the mesophilic methanococci M. voltae and M. vannielii, respectively. The ORF (ORF 206) immediately 5' to the hisA gene of M. thermolithotrophicus is partially deleted in the genomes of the two mesophilic species, whereas ORF 114, which is 5' to ORF 206, is conserved in all three species.Archaebacterial species exhibit one of three phenotypes: methanogenic, halophilic, or sulfur dependent thermoacidophilic (1,13,22). The deepest phylogenetic division within the methanogenic group separates the methanococcal species from all the other methanogens and from the halophiles (13,19,22). The methanococci are attractive subjects for molecular biology experiments and as candidate species for developing archaebacterial genetics. They grow relatively quickly, form colonies on agar-solidified defined media (1,8,21), contain plasmids (23), can be transformed (3), give rise to mutants (7,16), and can be lysed for DNA isolation simply by the addition of detergents (12) proCJ 19 tsx purEl galK2 trp-3 hisA4 argG36 rpsL xyl-Imtl-I ilvA6 thr-J met-12 (6; obtained from R. Curtiss III).Transformants of E. coli X760 which grew at 37°C on plates containing supplemented M9-glucose minimal-salts medium lacking histidine but containing 100 ,ug of ampicillin per ml were selected (2). One such transformant contained plasmid pET9301 which was shown by DNA sequencing (14) to contain a 2,155-base-pair (bp) HindIII-BamHI-generated fragment of M. thermolithotrophicus genomic DNA (Fig.