The disagreement between the two research groups derives mainly from different scientific viewpoints. One is based on a parochial view guided by the immediate needs of local site managers; the other takes a wider view of ecology, which uses a landscape-level approach to develop information with broader application. This Reply Comment clarifies several issues, refocuses attention on the scientific aspects of this discussion, and summarizes information needed to develop a wider perspective for future management of coastal impoundments, especially given anticipated changes in climate, sea level, and other global factors. We discuss the challenges of studying complex ecological systems with the goal of providing useful information to managers, who must often make difficult decisions.