. Differences in time-dependent hypoxic phrenic responses among inbred rat strains. J Appl Physiol 98: 838 -844, 2005. First published November 5, 2004; doi:10.1152 doi:10. /japplphysiol.00984.2004 responses differ between rodent strains, suggesting a genetic contribution to interindividual variability. However, hypoxic ventilatory responses consist of multiple time-dependent mechanisms that can be observed in different respiratory motor outputs. We hypothesized that strain differences would exist in discrete time-dependent mechanisms of the hypoxic response and, furthermore, that there may be differences between hypoglossal and phrenic nerve responses to hypoxia. Hypoglossal and phrenic nerve responses were assessed during and after a 5-min hypoxic episode in anesthetized, vagotomized, and ventilated rats from four inbred strains: Brown Norway (BN), Fischer 344 (FS), Lewis (LW), and Piebald-viral-Glaxo (PVG). During baseline, burst frequency was higher in PVG than LW rats (P Ͻ 0.05), phrenic burst amplitude was higher in PVG vs. other strains (P Ͻ 0.05), and hypoglossal burst amplitude was higher in PVG and BN vs. FS and LW (P Ͻ 0.05). During hypoxia, burst frequency did not change in BN or LW rats, but it increased in PVG and FS rats. The phrenic amplitude response was smallest in PVG vs. other strains (P Ͻ 0.05), and the hypoglossal response was similar among strains. Short-term potentiation posthypoxia was slowest in FS and fastest in LW rats (P Ͻ 0.05). Posthypoxia frequency decline was absent in PVG, but it was observed in all other strains. Augmented breaths were observed during hypoxia in FS rats only. Thus genetic differences exist in the time domains of the hypoxic response, and these are differentially expressed in hypoglossal and phrenic nerves. Furthermore, genetic diversity observed in hypoxic ventilatory responses in unanesthetized rats may arise from multiple neural mechanisms. hypoxia; breathing; hypoglossal; genetic BOTH EXPERIENCE (i.e., plasticity; reviewed in Ref. 29) and genetics (reviewed in Ref. 17) influence the neural control of breathing. Genetic influences on respiratory control have been described in rats (13,15,20,37), mice (40), and humans (42). Because rats are commonly used to investigate fundamental aspects of breathing, an understanding of the genetic determinants of ventilatory control in this species is essential. Furthermore, understanding of the range of genetic variation in respiratory control may have important clinical implications in a genetically diverse population, such as humans.Differences in ventilation among inbred and outbred rat strains have been documented during eupnea (quiet breathing), hypoxia, hypercapnia, and exercise (13,20,37), and some of these changes have been associated with genotypic differences, localized to specific chromosomes (13). For example, in Brown Norway (BN) rats the frequency response to hypoxia is small compared with some other strains (20, 37). Hodges et al. (20) reported that, although BN rats responded to hypoxia with less change...