We identified the rat Sam68-like mammalian protein (rSLM-2), a member of the STAR (signal transduction and activation of RNA) protein family as a novel splicing regulatory protein. Using the yeast two-hybrid system, coimmunoprecipitations, and pull-down assays, we demonstrate that rSLM-2 interacts with various proteins involved in the regulation of alternative splicing, among them the serine/arginine-rich protein SRp30c, the splicing-associated factor YT521-B and the scaffold attachment factor B. rSLM-2 can influence the splicing pattern of the CD44v5, human transformer-2 and tau minigenes in cotransfection experiments. This effect can be reversed by rSLM-2-interacting proteins. Employing rSLM-2 deletion variants, gel mobility shift assays, and linker scan mutations of the CD44 minigene, we show that the rSLM-2-dependent inclusion of exon v5 of the CD44 pre-mRNA is dependent on a short purinerich sequence. Because the related protein of rSLM-2, Sam68, is believed to play a role as an adapter protein during signal transduction, we postulate that rSLM-2 is a link between signal transduction pathways and pre-mRNA processing.Prior to export to the cytosol, pre-mRNA generated from most eukaryotic genes undergoes maturation processes such as splicing, in which intronic sequences are removed and exonic sequences are rejoined, as well as polyadenylation and 5Ј-end capping. There is increasing evidence that transcription, pre-mRNA processing, and RNA transport are coupled in a highly coordinated manner (1-3). Recent results indicate a direct interaction among RNA polymerase II, transcription, capping, splicing, and polyadenylation factors (3-6). These complexes are possibly attached to chromatin, for example by the scaffold attachment factor B (SAF-B 1 ) (7). This supports the model of a large RNA processing unit (8, 9) termed RNA factory (3). Pre-mRNA splicing is characterized by a high fidelity and can be modulated in a cell type-or development-specific way to use exons alternatively. Although the exact mechanisms governing splice site selection are still not fully understood, recent results indicate that loosely defined signals on the pre-mRNA known as splicing enhancers/silencers, play a crucial role in splice site selection (10 -12). An important class of proteins that recognize splicing enhancers/silencers is the serine/arginine-rich (SR) and SR-related protein family that is involved in both constitutive and alternative splicing (13,14). In addition, it has also been shown that an increasing number of heterogenous nuclear ribonucleoproteins (hnRNPs) are involved in the regulation of alternative splicing. For example, splicing regulation of the neuron-specific exon N1 or the src pre-mRNA is under the control of the hnRNPs hnRNP I (polypyrimidine tract binding protein), hnRNP F, and hnRNP H (15, 16). SR proteins and hnRNPs can change alternative splicing patterns in a concentration-dependent manner both in vivo and in vitro (for review, see Refs. 13 and 14). Because the relative expression levels of SR proteins and...