This work demonstrates that phototaxis stimuli in the archaebacterium Halobacterium halobium control a methylation/demethylation system in vivo through photoactivation of sensory rhodopsin I (SR-I) in either its attractant or repellent signaling form as well as through the repellent receptor sensory rhodopsin II (SR-Il, also called phoborhodopsin). (14) and phototaxis behavior (15). A clue to the mechanism of information transfer from the SR-I chromophoric protein was the finding of a methylaccepting protein of =94 kDa covariant in a series of mutants with the SR-I chromophoric protein of 25 kDa (16). The 94-kDa protein resembles the chemotaxis signal generators ("transducers") of eubacteria (e.g., Escherichia colt), which transmit chemoreceptor signals from the membrane to a cytoplasmic sensory pathway. In eubacteria methylation of the transducers occurs by carboxylmethyl esterification of glutamate residues in the signal-transmitting domain and mediates adaptation to chemostimuli (17)(18)(19)(20).Reversible protein methylation was implicated in phototaxis and chemotaxis adaptation in H. halobium before the identification of specific taxis receptors (21-25). Methylaccepting membrane proteins in the 90-to 150-kDa range can be visualized by autofluorography of protein gels and are lost in taxis-mutants (16,26), are regained upon reversion to taxis' (16), and exhibit changes in extent of methylation induced by chemostimuli (26). The lability of the methyl linkages to mild base indicates these proteins are carboxylmethylated (16, 26). Hydrolysis of the carboxylmethyl ester bonds in E. coli results in methanol production (27, 28), which has been used to monitor methylesterase activity in vivo (29) and to detect changes in the rate of carboxylmethyl hydrolysis induced by chemostimuli (30). Applying this assay to H. halobium, Alam et al. (26) observed increases in the rate of evolution of volatile methyl groups after stimulation with chemotaxis effectors. Light-induced increases were also reported (26). These observations provided evidence for methylation involvement in phototaxis, but demonstration of control of methylation by photoactivation of the known photoreceptors was not available.Computerized cell-tracking methods have been implemented to study swimming behavior of H. halobium in response to selective photoactivation of 32), and spectroscopic procedures have been developed to monitor SR-I and SR-II photochemical reactions (5, [8][9][10]12). In the work presented here, we have applied these methods to characterize receptor mutants and to investigate Abbreviations: SR-I and -II, sensory rhodopsin I and II, respectively; BR, bacteriorhodopsin; HR, halorhodopsin.