In all types of ischemia, changes in the pool of amino acids were observed in both studied structures. An increase in the content of L-arginine was noted in patients with ischemia of varying severity, the most pronounced in ischemia (by 39%, p<0.05). Also, with all types of ischemia, there was an increase in glycine, while only with IHM, an increase in the level of aspartate was noted, p<0.05. Along with changes in neurotransmitters, in the subtotal ischemia and partial ischemia groups, a decrease in the content of methionine was noted (p<0.05), while in total ischemia, on the contrary, an increase in the content of this amino acid was noted (p<0.05). In addition, with total ischemia, an increase in the content of threonine and tryptophan was noted. Changes in the pool of amino acids in rats with stepwise subtotal ischemia with intervals between arteria dressings on days 1 and 3 were the closest to changes in the subtotal ischemia group. So, in the 2nd pg. with an interval between dressings of the arteria for 3 days, the decrease in methionine and cysteine was the same as with subtotal ischemia, and there were no significant differences in the content of other amino acids. In the 3rd pg., with an interval between common carotid artery dressings of 1 day, as in subtotal ischemia, there was a decrease in the content of methionine, but, compared with subtotal ischemia, a decrease in cysteine was observed in parietal cortex (p<0.05). Changes in the pool of amino acids in the parietal lobe and hippocampus were of a similar nature, however, with stepwise subtotal ischemia, with an interval between dressings of both common carotid artery of 7 days, a decrease in cysteine occurred in the parietal cortex, and with partial ischemia, a more significant decrease in the level of methionine.