Calcium binding and dissociation within the cardiac thin filament (CTF) is a fundamental regulator of normal contraction and relaxation. Although the disruption of this complex, allosterically mediated process has long been implicated in human disease, the precise atomiclevel mechanisms remain opaque, greatly hampering the development of novel targeted therapies. To address this question, we used a fully atomistic CTF model to test both Ca 2+ binding strength and the energy required to remove Ca 2+ from the N-lobe binding site in WT and mutant troponin complexes that have been linked to genetic cardiomyopathies. This computational approach is combined with measurements of in vitro Ca 2+ dissociation rates in fully reconstituted WT and cardiac troponin T R92L and R92W thin filaments. These human disease mutations represent known substitutions at the same residue, reside at a significant distance from the calcium binding site in cardiac troponin C, and do not affect either the binding pocket affinity or EF-hand structure of the binding domain. Both have been shown to have significantly different effects on cardiac function in vivo. We now show that these mutations independently alter the interaction between the Ca 2+ ion and cardiac troponin I subunit. This interaction is a previously unidentified mechanism, in which mutations in one protein of a complex indirectly affect a third via structural and dynamic changes in a second to yield a pathogenic change in thin filament function that results in mutation-specific disease states. We can now provide atom-level insight that is potentially highly actionable in drug design.cardiac thin filament | hypertrophic cardiomyopathy | calcium homeostasis | molecular modeling | steered molecular dynamics C ardiac contraction is regulated by the binding of Ca 2+ to cardiac troponin C (cTnC) (1, 2) ( Fig. 1). The Ca 2+ binds in an EF-hand motif, consisting of two α-helices separated by a loop region containing seven coordinating oxygens that interact with the Ca 2+ , as seen in Fig. 2. Once Ca 2+ is bound, interactions between cTnC and the switch peptide domain of cardiac troponin I (cTnI) cause conformational changes that reduce the ability of cTnI to bind to actin (3). When bound to actin, cTnI shifts the equilibrium location of cardiac tropomyosin (cTM) to a position that prevents the interaction of actin with myosin, thereby inhibiting the power stroke that drives contraction of cardiac muscle (4, 5). Thus, Ca 2+ binding can be viewed as the initial step in a process that results in the eventual hydrolysis of ATP, with the sliding of the thin filament over the thick filament and the generation of mechanical work (5, 6). In disease states, changes in the ability of the cardiac muscle to be properly regulated by and to regulate Ca 2+ are often observed and play a central role in pathogenic remodeling and sudden cardiac death (SCD) (7). What is not well understood is the proximal biophysical cause by which mutation affects function at the molecular level.Due to both the size (ove...