Changes in grassland soil types lead to different characteristics of bacterial and fungal communities in Northwest Liaoning, China

Ma, Xinwei; Ren, Baihui; Yu, Jie; Wang, Jiayu; Bai, Long; Li, Daiyan; Meng, Meng

doi:10.3389/fmicb.2023.1205574

Cited by 5 publications

(2 citation statements)

References 77 publications

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“…This result is consistent with previous research, which found that geographical factors could lead to certain differences in the composition and abundance of soil microbial communities in different geographical locations [45]. There are also studies indicating that the specific changes in soil microbial community diversity and structure are related to differences in soil structure and plant type [46].…”

Section: Discussionsupporting

confidence: 92%

A Comparative Analysis of Microbial Communities in the Rhizosphere Soil and Plant Roots of Healthy and Diseased Yuanyang Nanqi (Panax vietnamensis) with Root Rot

Chen,

Cheng,

Zhang

et al. 2024

Agriculture

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Microbial communities are not only an important indicator of soil status but also a determinant of plant nutrition and health levels. Loss of microbial community ecosystem control can directly lead to microbial disease occurrence. During the process of Yuanyang Nanqi wild imitation planting, root rot diseases frequently occur, seriously affecting their yield and quality. Via amplicon sequencing, this study mainly compared the microbial community composition between the rhizosphere soil and roots of healthy and diseased Yuanyang Nanqi with root rot. The α-diversity showed that the microbial community diversity and abundance in the roots of diseased Yuanyang Nanqi were much lower than those of those in healthy specimens, while no significant difference was found in the rhizosphere soil. The β－diversity showed that the bacterial community in the Gejiu region and the fungal community in the Honghe region were significantly different from those in other regions. The species relative abundance map showed that there was no obvious difference in microbial community composition between the rhizosphere soil and roots of healthy and diseased Nanqi, but in diseased specimens with root rot, the proportions of Pseudomonas and Fusarium increased. Based on a functional prediction analysis of FUNGuild, the results showed that the Nanqi roots were mainly pathological saprophytic type and that their rhizosphere soil was mainly saprophytic type. The microorganisms in the roots of Yuanyang Nanqi tubers with root rot were also isolated and identified through the use of the culture method. The possible pathogenic strains were tested via anti－inoculation, and Fusarium oxysporum was identified as one of the main pathogenic fungi of Nanqi root rot, which was consistent with the amplicon sequencing results. These results will help us understand the change trend of microbial communities in healthy and diseased plants and analyze the pathogens involved, the pathogenesis, and the beneficial microorganisms, which would provide a theoretical basis for effective biological control.

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Section: Discussionsupporting

confidence: 92%

A Comparative Analysis of Microbial Communities in the Rhizosphere Soil and Plant Roots of Healthy and Diseased Yuanyang Nanqi (Panax vietnamensis) with Root Rot

Chen,

Cheng,

Zhang

et al. 2024

Agriculture

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“…The aggregates smaller than 1 mm may be significant locations for the transformation of soil organic carbon. Soil organic carbon plays a crucial role in shaping microbial community composition ( Teng et al, 2021 ; Ma et al, 2023 ), potentially resulting in variations in microbial communities involved in organic carbon transformation across different soil aggregates. Among the differential biomarkers between groups, combined with the rate of conversion of SOC and the correlation of microbial genera at the genus level, it was found that the unidentified genus under Ktedonobacteraceae and the uncultured Rhodospirillales bacterium were significantly and positively correlated with the SOC transformation rate in 0.5–1 mm aggregates.…”

Section: Discussionmentioning

confidence: 99%

Microbial community structure and carbon transformation characteristics of different aggregates in black soil

Zhao,

Zhang,

Cui

2024

PeerJ

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Background Previous research on whole-soil measurements has failed to explain the spatial distribution of soil carbon transformations, which is essential for a precise understanding of the microorganisms responsible for carbon transformations. The microorganisms involved in the transformation of soil carbon were investigated at the microscopic scale by combining 16S rDNA sequencing technology with particle-level soil classification. Methods In this experiment,16S rDNA sequencing analysis was used to evaluate the variations in the microbial community structure of different aggregates in no-tillage black soil. The prokaryotic microorganisms involved in carbon transformation were measured before and after the freezing and thawing of various aggregates in no-tillage black soil. Each sample was divided into six categories based on aggregate grain size: >5, 2–5, 1–2, 0.5–1, 0.25–0.5, <0.25 mm, and bulk soil. Results The relative abundance of Actinobacteria phylum in <0.25 mm aggregates was significantly higher compared to that in other aggregates. The Chao1 index, Shannon index, and phylogenetic diversity (PD) whole tree index of <0.25 mm aggregates were significantly smaller than those of in bulk soil and >5 mm aggregates. Orthogonal partial least-squares discrimination analysis showed that the microbial community composition of black soil aggregates was significantly different between <1 and >1 mm. The redundancy analysis (RDA) showed that the organic carbon conversion rate of 0.25–0.5 mm agglomerates had a significantly greater effect on their bacterial community structure. Moreover, humic acid conversion rates on aggregates <0.5 mm had a greater impact on community structure. The linear discriminant analysis effect size (LEfSe) analysis and RDA analysis were combined. Bradyrhizobium, Actinoplane, Streptomyces, Dactylosporangium, Yonghaparkia, Fleivirga, and Xiangella in <0.25 mm aggregates were positively correlated with soil organic carbon conversion rates. Blastococcus and Pseudarthrobacter were positively correlated with soil organic carbon conversion rates in 0.25–0.5 mm aggregates. In aggregates smaller than 1 mm, the higher the abundance of functional bacteria that contributed to the soil’s ability to fix carbon and nitrogen. Discussion There were large differences in prokaryotic microbial community composition between <1 and >1 mm aggregates. The <1 mm aggregates play an important role in soil carbon transformation and carbon fixation. The 0.25–0.5 mm aggregates had the fastest organic carbon conversion rate and increased significantly more than the other aggregates. Some genus or species of Actinobacteria and Proteobacteria play a positive role in the carbon transformation of <1 mm aggregates. Such analyses may help to identify microbial partners that play an important role in carbon transformation at the micro scale of no-till black soils.

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Impact of nitrogen addition on the chemical properties and bacterial community of subtropical forests in northern Guangxi

Jiang,

Ou,

Tan

et al. 2024

Front. Microbiol.

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IntroductionIn recent years, nitrogen deposition has constantly continued to rise globally. However, the impact of nitrogen deposition on the soil physicochemical properties and microbial community structure in northern Guangxi is still unclear.MethodsAlong these lines, in this work, to investigate the impact of atmospheric nitrogen deposition on soil nutrient status and bacterial community in subtropical regions, four different nitrogen treatments (CK: 0 gN m–2 a–1, II: 50 gN m–2 a–1, III: 100 gN m–2 a–1, IV: 150 gNm– 2 a–1) were established. The focus was on analyzing the soil physical and chemical properties, as well as bacterial community characteristics across varying nitrogen application levels.Results and discussionFrom the acquired results, it was demonstrated that nitrogen application led to a significant decrease in soil pH. Compared with CK, the pH of treatment IV decreased by 4.23%, which corresponded to an increase in soil organic carbon and total nitrogen. Moreover, compared with CK, the soil organic carbon of treatment IV increased by 9.28%, and the total nitrogen of treatment IV increased by 19.69%. However, no significant impact on the available nitrogen and phosphorus was detected. The bacterial diversity index first increased and then decreased with the increase of the nitrogen application level. The dominant phylum in the soil was Acidobacteria (34.63–40.67%), Proteobacteria, and Chloroflexi. Interestingly, the abundance of Acidobacteria notably increased with higher nitrogen application levels, particularly evident in the IV treatment group where it surpassed the control group. Considering that nitrogen addition first changes soil nutrients and then lowers soil pH, the abundance of certain oligotrophic bacteria like Acidobacteria can be caused, which showed a first decreasing and then increasing trend. On the contrary, eutrophic bacteria, such as Actinobacteria and Proteobacteria, displayed a decline. From the redundancy analysis, it was highlighted that total nitrogen and pH were the primary driving forces affecting the bacterial community composition.

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Changes in grassland soil types lead to different characteristics of bacterial and fungal communities in Northwest Liaoning, China

Cited by 5 publications

References 77 publications

A Comparative Analysis of Microbial Communities in the Rhizosphere Soil and Plant Roots of Healthy and Diseased Yuanyang Nanqi (Panax vietnamensis) with Root Rot

A Comparative Analysis of Microbial Communities in the Rhizosphere Soil and Plant Roots of Healthy and Diseased Yuanyang Nanqi (Panax vietnamensis) with Root Rot

Microbial community structure and carbon transformation characteristics of different aggregates in black soil

Impact of nitrogen addition on the chemical properties and bacterial community of subtropical forests in northern Guangxi

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