In this paper we prove weighted estimates for a class of smooth multilinear square functions with respect to multilinear $A_{\vec P}$ weights. In particular, we establish weighted estimates for the smooth multilinear square functions associated with disjoint cubes of equivalent side-lengths. As a consequence, for this particular class of multilinear square functions, we provide an affirmative answer to a question raised by Benea and Bernicot (Forum Math. Sigma 4, 2016, e26) about unweighted estimates for smooth bilinear square functions.