Proteomics aims at simultaneous analysis of complex protein mixtures. Contrary to protein analysis, it is not (primarily) interested in characterization or quantifi cation of single proteins. Proteomic investigations mainly rely on protein patterns, and protein identifi cation is achieved only at a later time. Therefore, proteomic strategies aim at high-resolution methods, usually twoor multidimensional, to provide a good overview on protein composition. Nowadays, there are two main types of proteomic workfl ow: (1) one approach relying on two-dimensional gel electrophoretic (2DE) separations of the sample, followed by appropriate detection, evaluation (including statistical analysis), and identifi cation of possibly interesting protein spots, and (2) the other approach taking advantage of mass spectrometric (MS) methods, usually in combination with one-or multidimensional liquid chromatography, after enzymatic or chemical cleavage of the protein specimen (see Chapter 2 for more details). The present chapter will focus on 2DE and associated protein separation strategies illustrating the numerous methodological possibilities this method can offer. The aim is to address the question, " What is possible; how is it possible? " rather than, " What has been done in the animal proteomic fi eld? " (which is covered elsewhere in this volume). Therefore, the examples cited do not always concern animal applications, but try to illustrate methodology in an optimal way.