Background: Hemangioblastoma is a benign tumor occurring in the central nervous system. As known, the most common sites are the cerebellum and spinal cord with the typical appearance which is a nodule with a cyst and contrast-enhanced scan demonstrates the obvious enhancement of the nodule and the local cyst wall. However, it’s difficult to diagnose the hemangioblastoma when it occurs in the lateral ventricle, due to the rare incidence of hemangioblastoma in the lateral ventricle.Case presentation: A 28-year-old man with a 1-month history of recurrent headache accompanied by slight dizziness, then the computed tomography (CT) and magnetic resonance imaging (MRI) of brain showed the cystic solid tumor with obvious enhancement in the parenchymal part and local cystic wall, also, there was abnormal dilated blood vessel in the parenchymal part which was considered as the hemangioblastoma in the lateral ventricle.Conclusions: Total resection of the tumor was performed under neuronavigation, then the tumor was pathologically confirmed to be hemangioblastoma which was the Grade WHOI. Based on this study, we have increased the understanding of hemangioblastoma in the differential diagnosis of tumors located in the lateral ventricle and provide a new method of resection of the tumor.