2015
DOI: 10.3390/cli3010135
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Centered Log-Ratio (clr) Transformation and Robust Principal Component Analysis of Long-Term NDVI Data Reveal Vegetation Activity Linked to Climate Processes

Abstract: Predicting the future climate and its impacts on the global environment is model based, presenting a level of uncertainty. Alternative robust approaches of analyzing high volume climate data to reveal underlying regional and local trends are increasingly incorporating satellite data. This study uses a centered log-ratio (clr) transformation approach and robust principal component analysis (PCA), on a long-term Normalized Difference Vegetation Index (NDVI) dataset to test its applicability in analyzing large mu… Show more

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Cited by 45 publications
(12 citation statements)
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“…The significances of the P‐splines and the fixed effects were evaluated through F ‐tests (Wood, 2006) and Likelihood Ratio Test (LRT), respectively. Habitat associations were evaluated through a hierarchical clustering (Ward's minimum variance method; Murtagh & Legendre, 2014) where similarities among habitats types were estimated using Centered Log‐Ratios (clr) of habitat proportions (Aitchison, 1986, Faith, 2015; see Appendix ). We first evaluated the relative trends for the water (freshwater habitats and marine‐related systems) versus the terrestrial (human‐related habitats and terrestrial systems) domains.…”
Section: Methodsmentioning
confidence: 99%
“…The significances of the P‐splines and the fixed effects were evaluated through F ‐tests (Wood, 2006) and Likelihood Ratio Test (LRT), respectively. Habitat associations were evaluated through a hierarchical clustering (Ward's minimum variance method; Murtagh & Legendre, 2014) where similarities among habitats types were estimated using Centered Log‐Ratios (clr) of habitat proportions (Aitchison, 1986, Faith, 2015; see Appendix ). We first evaluated the relative trends for the water (freshwater habitats and marine‐related systems) versus the terrestrial (human‐related habitats and terrestrial systems) domains.…”
Section: Methodsmentioning
confidence: 99%
“…To effectively calculate the PCA of similar data, log-ratio transformation is highly recommended to determine and reveal inherent patterns [32,33]. In this study, raw (untransformed) and centered-log-ratio (clr) transformed data [34,35] were used in the PCA.…”
Section: Methodsmentioning
confidence: 99%
“…2, see Aitchison and Greenacre 2002; Daunis-i-Estadella et al 2011 for more details). It should be noticed that the compositions are now recognized as providing information only on the relative magnitude of their components (Faith 2015). This means that interpretations made from the compositional biplot are, by nature, drawn from ratios between all components, and not from individual components taken separately, as with the classical biplot.…”
Section: Methodsmentioning
confidence: 99%