Neurons in the developing CNS tend to send out long axon collaterals to multiple target areas. For these neurons to attain specific connections, some of their axon collaterals are subsequently pruned-a process called stereotyped axon pruning. One of the most striking examples of stereotyped pruning in the CNS is the pruning of corticospinal tract (CST) axons. The long CST collaterals from layer V neurons of the visual and motor cortices are differentially pruned during development. Here we demonstrate that select plexins and neuropilins, which serve as coreceptors for semaphorins, are expressed in visual cortical neurons at the time when CST axon collaterals are stereotypically pruned. By analyzing mutant mice, we find that the pruning of visual, but not motor, CST axon collaterals depends on plexin-A3, plexin-A4, and neuropilin-2. Expression pattern study suggests that Sema3F is a candidate local cue for the pruning of visual CST axons. Using electron microscopic analysis, we also show that visual CST axon collaterals form synaptic contacts in the spinal cord before pruning and that the unpruned collaterals in adult mutant mice are unmyelinated and maintain their synaptic contacts. Our results indicate that the stereotyped pruning of the visual and motor CST axon collaterals is differentially regulated and that this specificity arises from the differential expression of plexin receptors in the cortex.axon pruning ͉ corticospinal tract ͉ plexin A functional nervous system depends on the precise wiring of neuronal connections with appropriate targets. During early development, neurons tend to send out axons with excessive branches to multiple target areas. When the neuronal targets become mature, the unnecessary branches are specifically pruned. Stereotyped axon pruning, or pruning of long axon collaterals in a predictable manner, is a major phenomenon in the developing CNS. This type of pruning has been observed in species ranging from Drosophila to mouse and is thought to be essential for the normal development of the CNS (1-5).One classic example of stereotyped pruning in higher vertebrates is in the developing corticospinal tract (CST) (6-10). In developing rodents, CST axons originate from layer V cortical pyramidal neurons in all regions of the neocortex (9, 11). These axons are guided through the internal capsule, cerebral peduncle, and pyramidal tract and then turn dorsally to cross the midline at the pyramidal decussation before they reach the contralateral spinal cord (Fig. 1A). The targeting of primary CST axons to the spinal cord is followed by axon collateral branching to targets in the brainstem and spinal cord (Fig. 1B). This initial projection pattern of CST axons is later modified via stereotyped axon pruning as regions of the neocortex become specialized, and the rostral-caudal location of parent cells within the neocortex determines which axon collaterals are pruned (Fig. 1C). Thus, motor neurons in rostral cortex prune their axons from the superior and inferior colliculi, whereas visual neuron...