Summary Topoisomerase II is a key target for many anti-cancer drugs used to treat breast cancer. In human cells there are two closely related, but differentially expressed, topoisomerase II isoforms, designated topoisomerase Ila and P. Here, we report the production of a new polyclonal antibody raised against a fragment of the C-terminal domain of the 180 kDa form of topoisomerase II (the P isoform), which does not cross-react with the 170 kDa form (the a isoform). Using this antibody, together with a polyclonal antibody specific for the 170 al., 1991;Capranico and Zunino, 1992;Pommier, 1993). DNA topoisomerase II is a nuclear enzyme which alters DNA tertiary structure through transient double-stranded breakage of the DNA backbone and subsequent passage of a second intact DNA duplex through the break (reviewed in Osheroff et al., 1991;Wang, 1985;Austin and Fisher, 1990;Watt and Hickson, 1994). The aforementioned drugs, as well as several other intercalating agents, including amsacrine (Nelson et al., 1984), trap the enzyme in a covalently bound reversible complex with DNA, termed the cleavable complex. The stabilisation of this complex prevents religation of the broken DNA and produces lesions which are thought to be cytotoxic by virtue of their ability to inhibit the passage of the replication fork. There is evidence that the cellular level of topoisomerase II determines the extent of cleavable complex formation after drug treatment and, therefore, the degree of drug toxicity. Low levels of topoisomerase II are associated with the induction of a reduced number of DNA lesions and hence increased drug resistance (Beck et al., 1993;Pommier, 1993). The converse relationship has been shown in mutant cell lines hypersensitive to topoisomerase II inhibitors (Davies et al., 1988) and also in testicular teratoma cell lines compared with bladder cell lines (Fry et al., 1991).There are two isoforms of topoisomerase II in mammalian cells that are products of different genes (Drake et al., 1989;Jenkins et al., 1992;Tan et al., 1992;Austin et al., 1993).These isoforms are termed a (170 kDa form) and , ((180 kDa form) and have different patterns of expression, suggesting that they might perform different functions. The a isoform is produced primarily in late S-phase and during the G2/M phase of the cell cycle (Woessner et al., 1991), and is apparently more sensitive to teniposide and merbarone than is the (Drake, et al., 1989). The gene encoding the a isoform has been mapped to chromosome 17q21-22 in humans (Tsai-Pflugfelder et al., 1988). The P isoform is expressed throughout the cell cycle, with higher levels seen in non-proliferating cells (Woessner et al., 1991) and is encoded on chromosome 3p24 in humans (Jenkins et al., 1992;Tan et al., 1992).Drug resistance is a major clinical problem in the treatment of solid tumours. Tumours often become resistant to multiple, structurally unrelated drugs as a result of expression of the membrane efflux pump, P-glycoprotein (reviewed in Bradley and Ling, 1994). This is the classi...