Targeted gene disruption exploits homologous recombination (HR) as a powerful reverse genetic tool, for example, in bacteria, yeast, and transgenic knockout mice, but it has not been applied to plants, owing to the low frequency of HR and the lack of recombinogenic mutants. To increase the frequency of HR in plants, we constructed transgenic tobacco lines carrying the Escherichia coli RuvC gene fused to a plant viral nuclear localization signal. We show that RuvC, encoding an endonuclease that binds to and resolves recombination intermediates (Holliday junctions) is properly transcribed in these lines and stimulates HR. We observed a 12-fold stimulation of somatic crossover between genomic sequences, a 11-fold stimulation of intrachromosomal recombination, and a 56-fold increase for the frequency of extrachromosomal recombination between plasmids cotransformed into young leaves via particle bombardment. This stimulating effect may be transferred to any plant species to obtain recombinogenic plants and thus constitutes an important step toward gene targeting.Gene targeting (GT) involves the disruption or replacement of an endogenous allele by one manipulated in vitro. This replacement requires that after transfection into the target cell the transgene recombines with the target allele by homologous recombination (HR) by virtue of sharing extensive sequence similarity, rather than integrating randomly by illegitimate recombination. As HR occurs efficiently in many lower eukaryotes such as budding yeast and in bacteria, GT has proved to be a very powerful reverse genetic tool to study gene function. The GT technology is also now routine, if not still laborious in the generation of transgenic knockout mice, and has provided models for human genetic disease and the role of homeotic genes in development (1).The mechanism of HR has long been an elusive, yet fascinating, problem. Studies in prokaryotes and lower eukaryotes have provided much insight into the nature of this process, the recombination intermediates, the genes, and the proteins involved (2-4). The basic steps of HR are listed below together with the proteins required in Escherichia coli: (i) initiation of HR by a DNA double-strand break and͞or single-strand DNA formation by the RecBCD complex; (ii) exchange of DNA strands, including homology recognition and strand displacement, done by RecA-like proteins; (iii) heteroduplex extension, with branch or bubble migration, performed by RuvA plus RuvB or RecG to yield a recombination intermediate, a four-way DNA junction named the Holliday junction; and (iv) resolution of this heteroduplex Holliday junction by the endonuclease RuvC. Steps iii and iv have only very recently been elucidated: in E. coli the RuvA and RuvB proteins (encoded on one operon) have been shown to form a complex promoting ATP-dependent branch migration of Holliday junctions, a process of high importance for the formation of heteroduplex DNA. A second operon encodes RuvC and the orf-26 gene; RuvC is the endonuclease that binds specifi...