The applications of DNA cloning and fluorescent in situ hybridization (FISH) techniques have strengthened the hypothesis of an ordered chromatin structure in interphase nuclei, strongly suspected to vary with functional state. The nonrandom distribution of the centromeres and their dynamic rearrangement during the cell cycle have been well documented. A close proximity of specific centromeres to nucleoli has also been reported, but the functional meaning of this association is still unknown. In order to investigate whether the chromosome 1 centromere region to nucleolus association depends on the cell cycle and chromosome status, we combined FISH of probes specific for the lq12 region with Ki-67 nucleolar antigen fluorescent immunocytochemical (FICC) detection on the MCF-7 human breast cancer cell line and on the MRC-5 normal fibroblastic cell line. Both FISH and FICC signals were interactively localized in a one-step fluorescent microscopic observation and further analyzed using the Highly Optimized Microscope Environment (HOME) graphics microscope workstation, which provided computerized interactive marking of lq12 to nucleolus associations (lql2-nu) at the individual nucleus and nucleolus levels. This study confirms that centromeric regions, other than those adjacent to the major ribosomal cistrons, contribute to the perinucleolar chromatin and demonstrate that, during the cell cycle, the heterochromatic band lq12 is dynamically rearranged with regard to both the nuclear volume and the nucleoli. A relationship between the association of the chromosome 1 pericentromeric region with nucleoli and the nucleolar transcriptional activity is also strongly suggested. Key terms: Combination of FISH and immunocytochemistry, functional genome mapping, chromosome 1, nucleolus, interactive cytometry, HOME systemThe recent applications of DNA cloning and fluorescent in situ hybridization (FISH) techniques have strengthened the hypothesis of an ordered chromatin structure, strongly suspected to vary with functional state, in the interphase nuclei (2,(20)(21)(22)(23)27,29,32). Using specific antibodies or nucleic acid probes, several authors have demonstrated the nonrandom distribution and the cell cycle dependent rearrangement of centromeres in interphase nuclei (1,9,13,36,38). The proximity of specific chromosome centromeres and nucleoli has also been reported (3,14,16,23,24). The short distance between the secondary [nucleolus organizer regions (NORs)] and the primary (centromeres) constrictions in acrocentric chromosomes is most likely responsible for the centromere to nucleolus proximity, which is the case for chromosomes 13,14,15,21, and 22 bearing the ribosomal DNA in humans. However, this hypothesis does not apply when chromosomes such as 1 and 9 are involved (23,331 and when the number of chromosome to nucleolus associations is higher than the number of NOR-bearing chromosomes (25).The aim of this work was thus to investigate whether the chromosome 1 centromeric region to nucleolus association depends on the cel...