Background: Activated phosphoinositide 3-kinase delta syndrome (APDS) is a recently described combined immunodeficiency condition resulting from gain-of-function mutations in PIK3CD, which encodes the catalytic subunit of phosphoinositide 3-kinase D (PI3Kd). Mutations in PIK3CD cause primary immunodeficiency with a spectrum of clinical manifestations characterized by recurrent respiratory tract infections, susceptibility to uncontrolled viral infections, impaired vaccine response, autoimmunity, hepatosplenomegaly, and an increased incidence of B-cell lymphoproliferation and lymphoma. Diagnosis of these deficiencies is crucial for their management. In recent years, targeted treatment with selective PI3Kd inhibitors has had a substantial effect on controlling the symptoms of these diseases. Case Presentation: Herein, we report a case of a patient with genetically confirmed PIK3CD mutation who initially presented with generalized lymphadenopathy. Hepatosplenomegaly complicated by immune-mediated anemia and thrombocytopenia resolved after a splenectomy. Over the next few months, the patient developed idiopathic, severe, and refractory chronic ascites requiring repeated diagnostic and therapeutic paracentesis. We hypothesized that autoimmune ascites, after exclusion of common and rare causes of ascites, especially the PIK3CD mutation, is a risk factor for autoimmune complications. The patient responded well to the corticosteroid therapy. Conclusion: PIK3CD mutation is a rare primary immune disease associated with immune dysregulation, immunodeficiency, and malignancy. Autoimmune ascites is an extremely rarely reported complication that needs to be considered after ruling out other known causes.