Abstract:SUMMARY
CENP-A is a centromere-specific histone 3 variant essential for centromere specification. CENP-A partially replaces canonical histone H3 at the centromeres. How the particular CENP-A/H3 ratio at centromeres is precisely maintained is unknown. It also remains unclear how CENP-A is excluded from non-centromeric chromatin. Here we identify Ccp1, an uncharacterized NAP family protein in fission yeast that antagonizes CENP-A loading at both centromeric and non-centromeric regions. Like the CENP-A loading fa… Show more
“…In addition, during interphase (G 1 to G 2 phase) but not in mitosis, Ccp1-GFP forms a distinct bright dot at the edge of the nucleus ( Fig. 2A), a similar cellular localization pattern was also observed by Dong et al (33). In fission yeast cells, all three centromeres cluster adjacent to the spindle pole body (SPB) at the nuclear periphery in interphase.…”
Section: Ccp1 Binds To the Central Core Regions Of The Centromeressupporting
confidence: 83%
“…Ccp1 shows a high structural similarity to Vps75, suggesting that it may function as an authentic histone chaperone (33). In budding yeast, Vps75 was shown to form a complex with Rtt109 and to promote Rtt109's acetyltransferase activity on Lys-56 of histone H3 (34,35).…”
Section: Deletion Of Ccp1 Causes Reduction In the Rates Of Pev Epigenmentioning
Distinct chromatin organization features, such as centromeres and heterochromatin domains, are inherited epigenetically. However, the mechanisms that modulate the accuracy of epigenetic inheritance, especially at the individual nucleosome level, are not well-understood. Here, using ChIP and next-generation sequencing (ChIP-Seq), we characterized Ccp1, a homolog of the histone chaperone Vps75 in budding yeast that functions in centromere chromatin duplication and heterochromatin maintenance in fission yeast (). We show that Ccp1 is enriched at the central core regions of the centromeres. Of note, among all histone chaperones characterized, deletion of the gene uniquely reduced the rate of epigenetic switching, manifested as position effect variegation within the centromeric core region (CEN-PEV). In contrast, gene deletion of other histone chaperones either elevated the PEV switching rates or did not affect centromeric PEV. Ccp1 and the kinetochore components Mis6 and Sim4 were mutually dependent forcentromere or kinetochore association at the proper levels. Moreover, Ccp1 influenced heterochromatin distribution at multiple loci in the genome, including the subtelomeric and the pericentromeric regions. We also found that Gar2, a protein predominantly enriched in the nucleolus, functions similarly to Ccp1 in modulating the epigenetic stability of centromeric regions, although its mechanism remained unclear. Together, our results identify Ccp1 as an important player in modulating epigenetic stability and maintaining proper organization of multiple chromatin domains throughout the fission yeast genome.
“…In addition, during interphase (G 1 to G 2 phase) but not in mitosis, Ccp1-GFP forms a distinct bright dot at the edge of the nucleus ( Fig. 2A), a similar cellular localization pattern was also observed by Dong et al (33). In fission yeast cells, all three centromeres cluster adjacent to the spindle pole body (SPB) at the nuclear periphery in interphase.…”
Section: Ccp1 Binds To the Central Core Regions Of The Centromeressupporting
confidence: 83%
“…Ccp1 shows a high structural similarity to Vps75, suggesting that it may function as an authentic histone chaperone (33). In budding yeast, Vps75 was shown to form a complex with Rtt109 and to promote Rtt109's acetyltransferase activity on Lys-56 of histone H3 (34,35).…”
Section: Deletion Of Ccp1 Causes Reduction In the Rates Of Pev Epigenmentioning
Distinct chromatin organization features, such as centromeres and heterochromatin domains, are inherited epigenetically. However, the mechanisms that modulate the accuracy of epigenetic inheritance, especially at the individual nucleosome level, are not well-understood. Here, using ChIP and next-generation sequencing (ChIP-Seq), we characterized Ccp1, a homolog of the histone chaperone Vps75 in budding yeast that functions in centromere chromatin duplication and heterochromatin maintenance in fission yeast (). We show that Ccp1 is enriched at the central core regions of the centromeres. Of note, among all histone chaperones characterized, deletion of the gene uniquely reduced the rate of epigenetic switching, manifested as position effect variegation within the centromeric core region (CEN-PEV). In contrast, gene deletion of other histone chaperones either elevated the PEV switching rates or did not affect centromeric PEV. Ccp1 and the kinetochore components Mis6 and Sim4 were mutually dependent forcentromere or kinetochore association at the proper levels. Moreover, Ccp1 influenced heterochromatin distribution at multiple loci in the genome, including the subtelomeric and the pericentromeric regions. We also found that Gar2, a protein predominantly enriched in the nucleolus, functions similarly to Ccp1 in modulating the epigenetic stability of centromeric regions, although its mechanism remained unclear. Together, our results identify Ccp1 as an important player in modulating epigenetic stability and maintaining proper organization of multiple chromatin domains throughout the fission yeast genome.
“…How CENP-A is prevented from assembling into noncentromeric nucleosomes during replication is unclear. In addition to ubiquitin-dependent proteolysis, the nucleosome assembly protein (NAP) domain-containing Ccp1 and the chromatin remodeling complexes, such as facilitates chromatin transcription (FACT) and human histone cell cycle regulator (HIRA), also play important roles in removing mistargeted CENP-A (Choi et al 2012;Deyter and Biggins 2014;Dong et al 2016;Ciftci-Yilmaz et al 2018). Perhaps these factors maintain the integrity of chromosome arms by excluding ectopic CENP-A during replication.…”
Section: Discussionmentioning
confidence: 99%
“…Proper centromere assembly is dependent upon the tight regulation of CENP-A levels. Overexpression of CENP-A in many organisms causes misincorporation of CENP-A into noncentromeric regions, leading to chromosome missegregation and growth defects (Heun et al 2006;Olszak et al 2011;Choi et al 2012;Castillo et al 2013;Gonzalez et al 2014;Dong et al 2016;Shrestha et al 2017). CENP-A overexpression has been observed in a number of cancers, which might contribute to chromosome instability (Tomonaga et al 2003;Li et al 2007;Amato et al 2009;Scott and Sullivan 2014;Zhang et al 2016).…”
The centromere plays an essential role in chromosome segregation. In most eukaryotes, centromeres are epigenetically defined by the conserved histone H3 variant CENP-A. Proper centromere assembly is dependent upon the tight regulation of CENP-A level. Cell cycle regulation of CENP-A transcription appears to be a universal feature across eukaryotes, but the molecular mechanism underlying the temporal control of CENP-A transcription and how such regulation contributes to centromere function remains elusive. CENP-A in fission yeast has been shown to be transcribed before S phase. Using various synchronization methods, we confirmed that CENP-A transcription occurs at G1, leading to an almost twofold increase of the protein during S phase. Through a genetic screen, we identified the MBF (MluI box-binding factors) complex as a key regulator of temporal control of CENP-A transcription. The periodic transcription of CENP-A is lost in MBF mutants, resulting in CENP-A mislocalization and chromosome segregation defects. We identified the MCB (MluI cell cycle box) motif in the CENP-A promoter, and further showed that the MBF complex binds to the motif to restrict CENP-A transcription to G1. Mutations of the MCB motif cause constitutive CENP-A expression and deleterious effects on cell survival. Using promoters driving transcription to different cell cycle stages, we found that timing of CENP-A transcription is dispensable for its centromeric localization. Our data instead indicate that cell cycle-regulated CENP-A transcription is a key step to ensure that a proper amount of CENP-A is generated across generations. This study provides mechanistic insights into the regulation of cell cycle-dependent CENP-A transcription, as well as its importance on centromere function.
“…In addition, generation of a tagged version of the protein of interest expressing at the endogenous level is straightforward in S. pombe . Tags, such as GFP, HA, Myc, S and TAP, have been successfully used in S. pombe in our lab to study different aspects of cellular biology, such as heterochromatin silencing [1–3] or centromere regulation [4,5]. The protocol can be divided into five steps (Figure 1).…”
Proteins act as executors for almost all kinds of cellular processes. The majority of proteins achieve their proper functions through interacting with other proteins. Knowing the binding partners of a protein is instrumental for understanding its function. The antibody pull-down method is a powerful and common approach to detect protein-protein interactions. Here, an antibody pull-down protocol is described for detecting protein-protein interactions in fission yeast Schizosaccharomyces pombe.
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