Castanet: a pipeline for rapid analysis of targeted multi-pathogen genomic data
Richard Mayne,
Shannah Secret,
Cyndi Geoghegan
et al.
Abstract:MotivationTarget enrichment strategies generate genomic data from multiple pathogens in a single process, greatly improving sensitivity over metagenomic sequencing and enabling cost-effective, high throughput surveillance and clinical applications. However, uptake by research and clinical laboratories is constrained by an absence of computational tools that are specifically designed for the analysis of multi-pathogen enrichment sequence data. Here we present the Castanet pipeline: an analysis pipeline for end-… Show more
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